Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02994 ATGACATCGTTCTTGAAGCCTGAGAATGCTCTCAAAAGGGCGGAAGAGTTGATCAACGTTGGGCAGAAGCAGGATGCTTTGCAGACTCTTCATGACCTCATTACCTCAAAGAGATATAGAGCATGGCAAAAGACACTTGAAAGGATTATGTTCAAGTATGTTGAACTTTGTGTGGACATGCGCAAAGGACGGTTTGCTAAAGATGGGCTTATTCAATACAGAATAATTTGTCAACAGGTCAATGTTAGTTCACTTGAAGAGGTTATTAAACACTTTATGCACCTCTCAACTGAGAAAGCTGAGCAAGCCCGTAGCCAAGCACAGGCATTAGAAGAAGCACTTGATGTTGATGATTTAGAGGCTGATAAAAGGCCGGAGGATTTGATGTTGAGCTATGTCAGTGGGGAGAAAGGAAAGGACAGATCTGATCGAGAGCTTGTTACCCCATGGTTTAAATTTCTTTGGGAGACATACAGGACAGTGCTTGAGATATTGCGGAACAACTCAAAACTGGAAGCTTTATATGCTATGACAGCTCATCGAGCTTTTCAGTTCTGTAAGCAATATAAACGAACAACAGAGTTCCGCCGACTGTGTGAAATCATTAGAAACCATTTGGCTAATCTCAATAAATATCGTGACCAACGTGACAGGCCTGATCTTTCAGCTCCTGAAAGCTTACAATTGTATCTTGATACTAGGGTTGAGCAGCTGAAAATTGCCACTGAACTTGAACTGTGGCAGGAAGCCTTTAGATCGGTGGAGGATATACATGGACTGATGTGCTTGGTCAAGAAAACGCCTAAGCCATCTTTGATGGTTGTTTACTATGTGAAGCTGACAGAAATATTTTGGATATCATCAAGTCATCTGTATCATGCATATGCATGGTTCAGGCTTTTTTTATTGCAGAAAAGCTTCAACAAGAATCTGAGTCAGAAGGATTTGCAATTAATAGCTTCATCTGTTGTTCTAGCTGCACTTTCAGTGCCTCCTCATGATCGTACCTATGGCGCATCCCATTTGGAACTGGAGCACGAAAAAGAGAGAAATTTGAGGATGGCTAATCTCATTGGCTTTAATCTTGAAACTAAACCTGAAAGCAGAGAAATGCTGTCAAGATCATCACTTCTTGCTGAACTGGCATCCAAGGGAGTGATGTCTTGTGTAACTCAGGAAGTGAAAGACATTTACCATCTTTTGGAACATGAATTTTATCCCTCAGATCTTGCATTAAAAGCACAGCACATGATAACTAAGATCTCTAAGTTAGGGGGCAAGCTTTCTACTGCTTCTTCTGTTCCAGATGTACAATTGTCTCAGTATGTCCCAGCGCTGGAAAGACTTGCCACCATGAGGTTGCTGCAGCAGGTGTCCAATGTGTACCAGACAATGAAGATTGAGACCTTATCTGGGATGATCCCGTTCTTTGACTTTTCTGTAGTGGAAAAGATTTCTGTAGATGCTGTAAAGCAGAAGTTTGTATCAATGAGAGTTGATCATATGAAAAATGTTGTGATTTTTTGCAAAACGAGTCTTGAGTCTGATGGCTTAAGAGATCACTTGGCCAATTTTGCTGAACAATTAAATAAGGCCAGACAAATGATTTATCCTCCTGATAGGAAACCATCAAAACTTGGAGCTTTGCTTCCAACACTGACAGAGGTTGTTGCCAAAGAACACAAGAGGCTTCTTGCCCGAAAATCAATTATTGAGAAGAGAAAAGAAGAACAAGAACGACAGCTTCTTGAAATGGAACGGGAGGAGGAGTCAAAAAGACTAAGACTACAGAAAATAACTGAAGAAGCTGAGCAAAGACGGCTTGCTACTGAGTATGAGCAGAGAAAGAATCAGAGGATCCTCAGGGAGATAGAGGAGAGAGAAATTGAAGAAGCTCAAGCGTTACTCCAGGAAGCTGAAAAGCGAATTAAAAAGAAGGGGAAAAAACCGATTATAGAGGGAGACAAAATCACCAAGCAGACGTTGATGGAGTTGACTTTGACCGAACAACTCCGGGAAAGGCAAGAAATGGAAAAAAAACTGCAGAAGCTTGCCAAAACCATGGATTATTTGGAAAGAGCAAAAAGAGAAGAGGCTGCTCCCCTTATTGAAGCTGCATATCAACAGCGTCTAGTGGAAGAGAGGCTTCTTCATGAGCGTGAACAACAGCAAGAGGTTGAACTGAGCAAACATAGGCATGAGGGAGATCTCAAGGAGAAGGAGAGGCTTGCACGAATGATGGGCAATAAGGAGATATATGAGGTCAGAGTTGTTAGTCATCGCCAAGCAGAGTTTAACAGATTGAAAAGAGAACGGGAAGAGCGAATCTCTAGGATTTTACAGTCCAGGAGACAGGAGAGGGAAAAAATGAGGAAGTTGAAGTATTATCTCAAATTAGAAGAAGAAAGACAACAAAAATTGCGCGAGGAGGAGGAAGCACGGAAACTTGAAGAGGCTGAAAGGAGAAAGAAGGAAGAGGTTGAACGCTTAGCAAAACTGGCCGAGATAGCCGAAAAGCAGAAGCAGAGAGAGAGAGAGCTTGATGAGAAGGAGAGACAGAGGAGAGAAGCCTTGTTGGGCAGAGCTGCTGAACCAGCTCCTCCTGTTCGGCCATTGGAATCTGTAACAGCCGCTCCTGCTGCAGCTGCAGCTGCAGCTGCTCCAACTCCTGGAAAATACATCCTCCCTAAATTCAGGCGAGAGAGAGCTGAAAGCACAGGAACTGCCCCTCGAACAGGAGCTGCCCCTCCTCCCGAAACAGACCGCTGGGGTAACAGTAGTTCCCGGCCTGATGGCGACAGGTGGCGTGGTGATGATAGGAGAAGTGGGTTTGGTTCTGGTGGAGGTTCAAGGTCATCTTCTACTTGGTCATCTTCCAACAGGAACCGTTGA 2892 0.4353 MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRVEQLKIATELELWQEAFRSVEDIHGLMCLVKKTPKPSLMVVYYVKLTEIFWISSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTYGASHLELEHEKERNLRMANLIGFNLETKPESREMLSRSSLLAELASKGVMSCVTQEVKDIYHLLEHEFYPSDLALKAQHMITKISKLGGKLSTASSVPDVQLSQYVPALERLATMRLLQQVSNVYQTMKIETLSGMIPFFDFSVVEKISVDAVKQKFVSMRVDHMKNVVIFCKTSLESDGLRDHLANFAEQLNKARQMIYPPDRKPSKLGALLPTLTEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLRLQKITEEAEQRRLATEYEQRKNQRILREIEEREIEEAQALLQEAEKRIKKKGKKPIIEGDKITKQTLMELTLTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQQRLVEERLLHEREQQQEVELSKHRHEGDLKEKERLARMMGNKEIYEVRVVSHRQAEFNRLKREREERISRILQSRRQEREKMRKLKYYLKLEEERQQKLREEEEARKLEEAERRKKEEVERLAKLAEIAEKQKQRERELDEKERQRREALLGRAAEPAPPVRPLESVTAAPAAAAAAAAPTPGKYILPKFRRERAESTGTAPRTGAAPPPETDRWGNSSSRPDGDRWRGDDRRSGFGSGGGSRSSSTWSSSNRNR 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02994 963 Coils Coil 615 649 - -
Spst1g02994 963 Gene3D - 269 342 - -
Spst1g02994 963 Gene3D - 352 495 - -
Spst1g02994 963 Gene3D UVR domain 217 268 - -
Spst1g02994 963 MobiDBLite consensus disorder prediction 839 859 - -
Spst1g02994 963 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 954 IPR027512 GO:0005852
Spst1g02994 963 MobiDBLite consensus disorder prediction 946 963 - -
Spst1g02994 963 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Spst1g02994 963 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Spst1g02994 963 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
Spst1g02994 963 Pfam PCI domain 373 508 IPR000717 -
Spst1g02994 963 Coils Coil 796 856 - -
Spst1g02994 963 MobiDBLite consensus disorder prediction 926 941 - -
Spst1g02994 963 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
Spst1g02994 963 Coils Coil 561 602 - -
Spst1g02994 963 Coils Coil 667 697 - -
Spst1g02994 963 Coils Coil 93 120 - -
Spst1g02994 963 MobiDBLite consensus disorder prediction 839 963 - -
Spst1g02994 963 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Spst1g02994 963 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 942 IPR027512 GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02994 Spst-Chr1 38490905 38496963 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02994 1 962 Eukaryotic Initiation Factors Gene Family AT4G11420 72.234 0.0 1325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02994 K03254 - gmx:100803796 1477.61