Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02993 GGTAACCACTGCGCCAGCGCCACTAAACAAGTGCGACCATATCCATCAAGTTATTTTTTCTCTTCTCAGCCTGAGAATGCTCTTAAAAGGGCGGAAGAGTTGATCAACGTTGGGCAGAAGCAGGATGCTTTGCAGACTCTTCATGACCTCATTACTTCAAAGAGATACAGAGCATGGCAAAAGACACTTGAAAGGATTATGTTCAAGTATGTTGAACTTTGTGTGGACATGCAAAAAGGACGGTTTGCTAAAGATGGGCTCATTCAGTACCGGATAATATGTCAGCAAGTGAATGTTAGTTCATTGGAGGAGGTTATTAAACACTTTGTGCACCTTTCAACTGAGAAAGCTGAACAAGCCCGTAGCCAAGCACAAGCATTAGAAGAAGCACTTGATGTCGATGATTTAGAGGCTGATAAAAGGCCGGGGGATTTAATGTTGAGCTATGTCAGTGGTGAGAAAGGAAAGGACAAATCTGATCAAGAGCTTGTTACCCCATGGTTTAAATTTCTTTGGGAGACTTACAGGACAGTGCTTGAGATATTGCGGAACAACTCAAAACTGGAAGTCTTATATGCTATGACAGTTCATCGAGCTTTTCAGTTCTGTAAGCAATATAAACGAACAACAGAGTTTTGCAGACTATGTGAAATCATAAGAAACCATTTGGCTAATCTCAATAAATACTGCGACCAACATGACAGGCCTGATCTTTCAGCTCCTGAAAGGTTACAATTCTATCTTGATACTAGGGTTGAGCAGCTGAAAATTGCCACTGAACTTGAACTTTGGCAGGAAGCCTTTAGATCAGTGGAGGATATCCATGGACTGATGTGCTTGGTCAAGAAAACGCCTAAGCCAACTTTGATGGTTGTTTACTATGTGAAGCTGACAGAAATATTTTGGATATCATCAAGTCATCTATATCATGCATATGCATGGTTCAGGCTCTTTTTATTGCAGAAAAGCTTCAATAAAAATCTGAGTCAGAAGGATTTGCAATTAATAGCGTCATCTGTTATTCTAACTGCACTCTTAGTGCCTCCTCATGATCGTACCTATGGTGCATCCCATTTGGAACTGGAGCCCAAAAAAGAGAAAAATTTGAGGATGGATAATCTCATTGGCTTTAATCTTGAAACTAAACCTGAAAGCAAAGAAAAGACTCCTCTAAATCTTGTATCTGCCATGAAAGGTAGCCGAGAGAAACATGGGGGACCACACGTGAAACTGCATGTGAAATGGGCGCATGATGTGTATGATCCAATACCTACATTATTATCACACACTGTCAAAAGCAACAAGAAGCAACGAAAATCCAGGAAGAAGAAACCTGAAAAGAAGAATGGAAAGAAGGGTAAAAAGGGAAATTCATCTCAAGGGGACAACAACAAAGATCAACAGTTTCGCAAGCTAGGTGGAATTTCTGGTTTGTGCTACAAGTCGATGGATTCTTGTGATCCAGTGCTTGTAGCTTCTTCTGAATTAGATGCTCTTGATGTTCCTAACCAGGATTGGTATTGTGGAACTAGCTTCTTGAAAAAATCAGTTACAGAAGTGCACTATTCAGTTGCAGAAGCGTTATGA 1587 0.4052 GNHCASATKQVRPYPSSYFFSSQPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMQKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFVHLSTEKAEQARSQAQALEEALDVDDLEADKRPGDLMLSYVSGEKGKDKSDQELVTPWFKFLWETYRTVLEILRNNSKLEVLYAMTVHRAFQFCKQYKRTTEFCRLCEIIRNHLANLNKYCDQHDRPDLSAPERLQFYLDTRVEQLKIATELELWQEAFRSVEDIHGLMCLVKKTPKPTLMVVYYVKLTEIFWISSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVILTALLVPPHDRTYGASHLELEPKKEKNLRMDNLIGFNLETKPESKEKTPLNLVSAMKGSREKHGGPHVKLHVKWAHDVYDPIPTLLSHTVKSNKKQRKSRKKKPEKKNGKKGKKGNSSQGDNNKDQQFRKLGGISGLCYKSMDSCDPVLVASSELDALDVPNQDWYCGTSFLKKSVTEVHYSVAEAL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02993 528 Gene3D UVR domain 234 285 - -
Spst1g02993 528 FunFam Eukaryotic translation initiation factor 3 subunit A 233 285 - -
Spst1g02993 528 Coils Coil 110 137 - -
Spst1g02993 528 Gene3D - 286 357 - -
Spst1g02993 528 MobiDBLite consensus disorder prediction 426 468 - -
Spst1g02993 528 FunFam Eukaryotic translation initiation factor 3 subunit A 285 359 - -
Spst1g02993 528 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 22 382 IPR027512 GO:0005852
Spst1g02993 528 MobiDBLite consensus disorder prediction 432 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02993 Spst-Chr1 38484798 38487951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02993 22 387 Eukaryotic Initiation Factors Gene Family AT4G11420 83.060 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02993 K03254 - gmx:100803796 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02993 1 38484798 38487951 Spst1g02993 1 38484798 38487951 ECH
Spst1g02993 1 38484798 38487951 Spst7g00732 7 7482689 7484196 PCT