LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g02990	ATGGCTGGTTCTAAACAAAAACTGTTTAATAGACTGAAGCCATTCATAGGTGTAGTGTTCTTACAGTTTGGATATGCTGGTATGGATGTTCTATCCAAAGCTGCACTGAACCAGGGAATGAGTAACTATGTATTTGTCGTGTACCGTCATGTTTTTGCTCTTGTTGTCACGCTCCCTTTTGCAGTGTTCTTGGAGAAGAAAGTGAGGCCGAAGATGACATTTTCAATCTTCATGAAGATAGTGATTCTCAGCTTGCTAGAGCCAGTTATTGACCAAAATTTATATTTTTTGGGAATGAAGTACACCACAGCAACCTTTGCCGTTTCCATGTACAATGTCCTCCCTGCCATTACCTTTCTCATGGCTTGGATTCTCAGGCTTGAGAAGGTAAAATTAAAAAGTGTACGCAGTCAAGCAAAGGTGGTGGGAACTTTAGCTACTGTTGCAGGTGCCATGATCATGACACTAATAAAGGGCCCAATACTTGATCTTTTTGGAACACACGGAAGCAATACACACAACCTGGAAAATGGTGGGATAAATATTCAACATGCAATTAAGGGATCGGTGATGATCACAATTGGCTGCTTTAGTTGCGCTTGTTTCATGATTCTCCAAGCTATTACCATTGAAGCGTACCCTGCTGAGCTCTCTCTTACAGCATGGATATGCCTATTGGGTTCGGTTGAAGGTGGCATAGTGGCACTGGTTATGGAAAGGAATAATTTTTCAGCCTGGTCTCTGAAATGGGATACAAAATTGCTAGCTGCTGTCTACAGTGGCATAGTGTGCTCAGGAATGGCTTATTACATCCAAGGAGCGGTGATGAAAGATAGAGGCCCTGTCTTTGTAACAACTTTTAACCCTCTTGGCATGGTCATTGTAGCTATCATGGGTTCCTTCTTTCTGGCAGAACAAATGTACCTCGGAAGGGCAATTGGAGCTGTTGTAATTATTTTAGGGCTGTATCTTGTGGTGTGGGGTAAAAGCAACGAGTACGAGTCATCAAGCACTATTACTGAAGATCATATATTACCAGCCAAGCAAACAATAGAAAAAAGCAGCGAAAAAGACAGAGAGGAACATTCTAATTTTGAAGTCATCACTCTCAGTAAGTTAGGCGCAGCAAGCATAGCACAAGATGAACAAGTATGA	1155	0.4182	MAGSKQKLFNRLKPFIGVVFLQFGYAGMDVLSKAALNQGMSNYVFVVYRHVFALVVTLPFAVFLEKKVRPKMTFSIFMKIVILSLLEPVIDQNLYFLGMKYTTATFAVSMYNVLPAITFLMAWILRLEKVKLKSVRSQAKVVGTLATVAGAMIMTLIKGPILDLFGTHGSNTHNLENGGINIQHAIKGSVMITIGCFSCACFMILQAITIEAYPAELSLTAWICLLGSVEGGIVALVMERNNFSAWSLKWDTKLLAAVYSGIVCSGMAYYIQGAVMKDRGPVFVTTFNPLGMVIVAIMGSFFLAEQMYLGRAIGAVVIILGLYLVVWGKSNEYESSSTITEDHILPAKQTIEKSSEKDREEHSNFEVITLSKLGAASIAQDEQV	384

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Spst1g02990	384	Pfam	EamA-like transporter family	19	154	IPR000620	GO:0016020
Spst1g02990	384	Pfam	EamA-like transporter family	187	326	IPR000620	GO:0016020
Spst1g02990	384	PANTHER	WAT1-RELATED PROTEIN	13	336	IPR030184	GO:0016020\|GO:0022857
Spst1g02990	384	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	248	330	-	-
Spst1g02990	384	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	48	156	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g02990	Spst-Chr1	38452218	38454606	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g02990	5	374	Nodulin-like Gene Family	AT2G37460	64.420	1.55e-172	484

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g02990	-		-	gmx:100777050	672.159

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst1g02990	1	38452218	38454606	Spst1g02990	1	38452218	38454606	ECH
	Spst1g02990	1	38452218	38454606	Spst7g00739	7	7617135	7620465	PCT

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