Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02988 ATGGAGGGGTTTGAGAGCATAGATTTGGCAAATTGTCTAATGCTTCTCTCTTGCCCCCAACAAAGGATATCACGACAGAAACATTTGGAGGGTGTGGAATTTGAGTGCAAGACATGCAACCGAAAGTTCTCGTCCTTTCAGGCATTGGGTGGGCATAGGGCTAGCCACAAAAGGTCCAAACTTGAGGGGGATGAACTCAAAGCACATGCTATATCCCTGAGATTGGGAATCGATAAACCCAAAATGCACGAGTGTTCCATTTGTGGACAAGAATTCTCATTGGGTCAGGCACTTGGAGGCCACATGAGAAGACATAGAGCTTCCATTAACGAAGACTCTTCTTCAATTAAACAGGTTGTTGCACAAGTACCAGTTTTGAAAAGATCAAATAGCCTGAGGGGTATGTGCATGGACTTGAACCTAACACCGTTAGAGAATGACTTGAAGTTATTGTTTGGAAACATGGCACCCAATGCTGGTGCCCTAGTTGAATATTGTGCAGTTTTGGTGTACAACTATTGGGCTTCAAAGCCCACAAATATGCTAATCCCAATGCCTCTTCATGCACCTGAATAA 576 0.4392 MEGFESIDLANCLMLLSCPQQRISRQKHLEGVEFECKTCNRKFSSFQALGGHRASHKRSKLEGDELKAHAISLRLGIDKPKMHECSICGQEFSLGQALGGHMRRHRASINEDSSSIKQVVAQVPVLKRSNSLRGMCMDLNLTPLENDLKLLFGNMAPNAGALVEYCAVLVYNYWASKPTNMLIPMPLHAPE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02988 191 SUPERFAMILY beta-beta-alpha zinc fingers 34 105 IPR036236 -
Spst1g02988 191 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Spst1g02988 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Spst1g02988 191 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Spst1g02988 191 Gene3D Classic Zinc Finger 31 105 - -
Spst1g02988 191 PANTHER ZINC FINGER PROTEIN ZAT5 7 147 - -
Spst1g02988 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Spst1g02988 191 SMART c2h2final6 83 105 IPR013087 -
Spst1g02988 191 SMART c2h2final6 34 56 IPR013087 -
Spst1g02988 191 Pfam C2H2-type zinc finger 83 107 - -
Spst1g02988 191 Pfam C2H2-type zinc finger 34 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02988 Spst-Chr1 38400558 38401838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02988 2 153 C2H2 Transcription Factor Family AT2G37430 49.367 2.38e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g02988 zf-C2H2_6 7.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02988 - - gmx:100806997 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02988 1 38400558 38401838 Spst7g00743 7 7660932 7661429 PCT