Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02987 ATGAAGAGACAGCGAGGTAATGAAGGATCGGAGTGCATAGATTTGGCAAAATGTCTTCTGCTGTTCTCTTGTCCACAAGAAAGCAACAAAGTACGAGAGAAAAGTTTTGGTTCTCTGGATTTTGAGTGCAAGACATGCAACCGCAAGTTCTCATCTTTTCAAGCACTGGGAGGGCACAGGGCAAGCCACAAGAGGCAGAAAGTTGAAGGGGGGGAACTGAAAGAAGAGGGAAAAAGTCTTAGCTTGTGGAGCAAACCTAAAATGCACGAGTGCTCCATCTGTGGCCTAGAATTCTCTCTGGGGCAGGCTCTGGGAGGACACATGAGAAAACACAGAGGTGTGAGCAACGAAGGGTTTGTTCCTGTTCCTTCTATGAACCAAGTCATTGCGAAAACCCCAGTTCTGAAAAGGTCGAATAGCACCAGGGTCATGTGCTTGGATTTGGAGTTACACCTGTAG 459 0.4706 MKRQRGNEGSECIDLAKCLLLFSCPQESNKVREKSFGSLDFECKTCNRKFSSFQALGGHRASHKRQKVEGGELKEEGKSLSLWSKPKMHECSICGLEFSLGQALGGHMRKHRGVSNEGFVPVPSMNQVIAKTPVLKRSNSTRVMCLDLELHL 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02987 152 PANTHER ZINC FINGER PROTEIN ZAT5 34 150 - -
Spst1g02987 152 Pfam C2H2-type zinc finger 41 66 - -
Spst1g02987 152 Pfam C2H2-type zinc finger 89 113 - -
Spst1g02987 152 SMART c2h2final6 41 63 IPR013087 -
Spst1g02987 152 SMART c2h2final6 89 111 IPR013087 -
Spst1g02987 152 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Spst1g02987 152 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Spst1g02987 152 Gene3D Classic Zinc Finger 39 111 - -
Spst1g02987 152 SUPERFAMILY beta-beta-alpha zinc fingers 41 111 IPR036236 -
Spst1g02987 152 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Spst1g02987 152 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02987 Spst-Chr1 38388878 38389336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02987 1 150 C2H2 Transcription Factor Family AT2G37430 43.750 1.52e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g02987 zf-C2H2_6 1.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02987 - - pvu:PHAVU_001G170800g 280.026