Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02966 ATGTCTGGTCGAACGCCGCCGCCGCCGCCGCCACCACCACAACCCAATCCGATCCTCGACGATAGGCTTCCTTTCTTCAACCAATCCATGGAACTAGTCCAACTCCCAAACCCACCCACAACCCGAACACGATCCCGCACCCTCGCTGATCTCCTCAAACGAGTCGAAGACGCCCAAAACGACACACCACCTGCACTACCCCACCATGTTCTTGACCTCTCCTCCTCCTCCGCCGCCACCCACCCCTTTGTCCTCTCCTTCTCCAACTTAACCTACAGCGTCAAGCTTCGCCGCAAGTTCACTTTCTTTCCCGCCGCCACTGTTTCCTCGCCCGACCACCAAACCAAACTCAACGGCACCAAGACTCTCCTTAATGATATCTCCGGAGAGGCCAGGGACGGCGAGATCATGGCCGTACTCGGCGCCAGCGGCTCCGGCAAGTCCACTCTCATCGACGCCCTCGCCGACCGCATCTCAAAGGAAAGCCTCAAAGGCACAGTCACCCTGAACGGTGACGTTTTAGACTCCAGTCTTTTAAAGGTTATATCCGCTTATGTTATGCAAGACGACCTCCTCTTCCCGATGCTCACCGTCGAAGAAACCCTCATGTTCGCCGCAGAGTTCAGACTCCCTCGCTCCCTCTCCAAATCCAAGAAGAAAGCGCGAGTCCAGGCCTTGATAGACCAGCTCGGCCTCCGGTCCGCCGCCTCCACCGTCATCGGCGATGAGGGCCATCGCGGAGTATCCGGCGGCGAACGCCGCCGCGTCTCAATAGGAATTGACATCATTCACGATCCCATCGTGCTTTTCCTCGACGAACCAACTTCGGGCCTCGACTCCACCAGCGCCTTCATGGTGGTGAAAGTGCTGCAGCGAATTGCACAGAGCGGAAGCATCGTCATCATGTCCATTCACCAACCTAGCTACAGAATCTTAGGCTTGTTGGACCACTTGATCTTCCTCTCCCACGGTAACACCGTCTACAGCGGCTCTCCGGCGAACCTCCCAGCCTTCTTCTCCGAGTTCGGCCACCCCATACCGGAGAACGAGAACCGCACCGAATTCGCGCTCGACCTAATTCGCGAACTCGAAGAAGAACCCGGCGGCACCAAGAGTTTAGTGGACTTCAACAAATCGTGGCAGCTGAAAAACAAAACCTCGGCCCAGGCCCAGGTCCAGAACGAGCCCAAACCCAAACCATCTCTGAAGGACGCCATCAGCGCTAGCATTTCCAGAGGAAAACTCGTGTCCGGCGCTAACGGCAACGGCAAAAACTCAACGGCGTCAGTTTCCGTTCCCGCCTTCGCGAATCCGTTTTGGATGGAAATGGCGGTGATAGGAAAACGGTCTCTAACGAACTCACGGAGGATGCCGGAGCTATTCGGGATTCGTTTGGGTGCAGTTCTTGTGACGGGGGCAATCTTGGCCACAATCTTCTGGCACCTGGATGATTCACCCAAAGGAGTTCAAGAGCGCGTGGGGTTCTTCGCCTTCGCCATGTCCACCACCTTTTACACCTGCGCCGAAGCCATCCCAGTGTTCCTCCAAGAGCGTTACATCTTCATGAGGGAAACCGCTTACAACGCGTACCGTCGCTCTTCCTACGTCCTCTCACACGCAATCATCTCACTCCCTTCCCTGCTCGTTCTCTCTCTCGCCTTTGCCGCCACCACCTTTTGGGCCGTGGGCCTGGCGGGCGGCTCTTCGGGCTTTCTCTTTTACTTTCTGGTAATCGTGGCCTCGTTCTGGGCCGGGAGCTCGTTCGTGACGTTCCTCTCGGGAGTGGTGTCGCACGTGATGATAGGGTTCACGGTGGTTGTTGCGATCTTGGCGTACTTTCTTCTCTTCAGCGGGTTCTTCATCAGCAGGGACAGGATCCCTCCGTACTGGCTATGGTTCCACTACCTGTCGCTGGTGAAGTACCCGTACGAGGGCGTGTTGCAGAACGAGTTCGACGTGAAATCTCCCAGGTGCTTCGTGAGGGGGATTCAGATGTTCGACAACACGCCGTTGGGGATGGTGCCGGAGACGCTGAAGGTGGAGCTGCTGAAGAGCATGAGCAACACCCTGGGCATGAACATCACGAGGTCGACGTGCGTGATCACCGGAGCGGATGTGCTGAATCAGCAGGGGATAACGCAGCTGAGCAAGTGGAACTGCTTCTGGATCACGGTTGCTTGGGGCTTCTTCTTTCGCTTCCTCTTTTATTTGACGCTCCTCTTTGGGAGCAGGAACAAGAGAAGGTAG 2247 0.5652 MSGRTPPPPPPPPQPNPILDDRLPFFNQSMELVQLPNPPTTRTRSRTLADLLKRVEDAQNDTPPALPHHVLDLSSSSAATHPFVLSFSNLTYSVKLRRKFTFFPAATVSSPDHQTKLNGTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALADRISKESLKGTVTLNGDVLDSSLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLSKSKKKARVQALIDQLGLRSAASTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDHLIFLSHGNTVYSGSPANLPAFFSEFGHPIPENENRTEFALDLIRELEEEPGGTKSLVDFNKSWQLKNKTSAQAQVQNEPKPKPSLKDAISASISRGKLVSGANGNGKNSTASVSVPAFANPFWMEMAVIGKRSLTNSRRMPELFGIRLGAVLVTGAILATIFWHLDDSPKGVQERVGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLSHAIISLPSLLVLSLAFAATTFWAVGLAGGSSGFLFYFLVIVASFWAGSSFVTFLSGVVSHVMIGFTVVVAILAYFLLFSGFFISRDRIPPYWLWFHYLSLVKYPYEGVLQNEFDVKSPRCFVRGIQMFDNTPLGMVPETLKVELLKSMSNTLGMNITRSTCVITGADVLNQQGITQLSKWNCFWITVAWGFFFRFLFYLTLLFGSRNKRR 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02966 748 Pfam ABC transporter 124 276 IPR003439 GO:0005524
Spst1g02966 748 ProSitePatterns ABC transporters family signature. 248 262 IPR017871 GO:0005524|GO:0016887
Spst1g02966 748 SMART AAA_5 133 348 IPR003593 GO:0016887
Spst1g02966 748 Gene3D - 112 339 IPR027417 -
Spst1g02966 748 MobiDBLite consensus disorder prediction 1 22 - -
Spst1g02966 748 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 70 736 - -
Spst1g02966 748 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 108 348 IPR003439 GO:0005524
Spst1g02966 748 Pfam ABC-2 type transporter 445 651 IPR013525 GO:0016020|GO:0140359
Spst1g02966 748 MobiDBLite consensus disorder prediction 1 19 - -
Spst1g02966 748 Pfam ABC-2 type transporter 305 395 IPR043926 GO:0140359
Spst1g02966 748 MobiDBLite consensus disorder prediction 385 404 - -
Spst1g02966 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 340 IPR027417 -
Spst1g02966 748 FunFam ABC transporter G family member 6 113 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02966 Spst-Chr1 38214481 38216727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02966 109 308 Calmodulin-binding Proteins AT2G36910 29.064 5.58e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02966 K05681 - gmx:100781319 1259.97