Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02952 ATGGATATTAAGGAAGCAGAAAGGGTGGTGATTGCCAAGCCTGTTGCTTCAAGGCCTACTTGTTCTACTTTCAAATCTTTCTCAGAGCTCCTAGCGGGTGCAATCAATGCTTCTCCTGTTATTGCATCTTCTCAAACTACAGTTTCTGCCATTAGACCCAAGACTGTGAGGTTCAAGCCAGCAGCATTGAATCGCCCCCCTGCTGGGTTGGATTCTTCTCAGGCTGATACTTTTGGAGCTGCACTTTGTAACTCTTCTGACAAAAGTCCTAAACTTGACACCAATCAGTCCCTCATATACAAGCCAACGGCAAAACTCGTGTCGAAGACAACCGTATCTCTTTTGGCAAATATGAAGGGAAATTGCAGCACTGGTCAGCAGCCAACACGGCAATTAATGGAGGGCAATTTTCAACATTCCATCCATGAAAAATTTAGAACCAACATGAGTTCACATCTTGATCAGAGTATTGCCCCGCATGCAGAAATAAATCAGATCAGTGAACCTAGTAAGATGGTGCAGCAGAACACAGAGGATGACCAAAAGACTTTAACATCCTCAGCGAATTGTGATCGCCCATCTTATGATGGGTACAATTGGAGGAAATATGGTCAGAAGCAAGTAAAAGGGAGTGAGTACCCGCGAAGTTATTACAAGTGCACACATCCTAATTGTCCAGTGAAGAAGAAGGTTGAAAGATCATTTGATGGGCAGATTGCAGAAATTGTTTATAAAGGTGAACACAACCATTCCAAGCCACAGCTTCCTAAACGAAACACAGCAACAGGAACACAAGGTTCGGGGGTGATGTCTGATGGAATGGTTCAAGATATGTGGAGTAATAGTCACAGTGAGAGGAATGAGGGCAATGAAAGTAGAGTTGAGAACACAGGAGGACTATCTGTGCTTTCAGATTATTATGTCAAAGTTCCACAGCCTAATGATTCTGTTCTAAATATTGGTGCAACTAATGCTGGTGGAGGAAGCACGGAAAACTCGTGTGGTCTAAGTGGTGAATGTGAGGAAGGAAGCAAGGGGTTTGAGGCACAGGAAGATGAACCCAGAAGTAAAAGAAGGAAAAATGAGAATCAATCTAATGAAGTAGCATTATCAGAGGAGGGTTTAGTAGAGTCGCGGATTGTGATGCAAAGTTTCACGGATTCTGAGATACTTGGAGATGGTTTTCGCTGGAGGAAATATGGACAGAAGGTGGTGAAGGGCAATCCATATCCCAGAAGTTACTATAGATGTACTAATATTAAGTGCAACGTTCGGAAGCACGTGGAGAGAGCAATAGATGACCCAAGATCATTTGTGACAACATATGAGGGAAAACACAATCATGAGATGCCTCTCAAGAACACAGGAAATGTGGCCTCTGAAAGAGATTCACAGGCTTCTCTTAAGAGGGAGAGAAGGAAACATTGTATTGCATTGCAAAATCAGATGGCACTTTCAAAGAGAGGTTTCCTACCAGCTGTATCTGGGTAA 1491 0.4306 MDIKEAERVVIAKPVASRPTCSTFKSFSELLAGAINASPVIASSQTTVSAIRPKTVRFKPAALNRPPAGLDSSQADTFGAALCNSSDKSPKLDTNQSLIYKPTAKLVSKTTVSLLANMKGNCSTGQQPTRQLMEGNFQHSIHEKFRTNMSSHLDQSIAPHAEINQISEPSKMVQQNTEDDQKTLTSSANCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGQIAEIVYKGEHNHSKPQLPKRNTATGTQGSGVMSDGMVQDMWSNSHSERNEGNESRVENTGGLSVLSDYYVKVPQPNDSVLNIGATNAGGGSTENSCGLSGECEEGSKGFEAQEDEPRSKRRKNENQSNEVALSEEGLVESRIVMQSFTDSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCNVRKHVERAIDDPRSFVTTYEGKHNHEMPLKNTGNVASERDSQASLKRERRKHCIALQNQMALSKRGFLPAVSG 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02952 496 MobiDBLite consensus disorder prediction 323 337 - -
Spst1g02952 496 MobiDBLite consensus disorder prediction 344 366 - -
Spst1g02952 496 SMART WRKY_cls 194 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g02952 496 SMART WRKY_cls 391 450 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g02952 496 SUPERFAMILY WRKY DNA-binding domain 384 451 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g02952 496 MobiDBLite consensus disorder prediction 246 268 - -
Spst1g02952 496 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 140 468 IPR044810 GO:0003700
Spst1g02952 496 MobiDBLite consensus disorder prediction 172 191 - -
Spst1g02952 496 ProSiteProfiles WRKY domain profile. 386 451 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g02952 496 FunFam WRKY transcription factor 180 254 - -
Spst1g02952 496 MobiDBLite consensus disorder prediction 323 370 - -
Spst1g02952 496 FunFam WRKY transcription factor 379 452 - -
Spst1g02952 496 Pfam WRKY DNA -binding domain 393 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g02952 496 Pfam WRKY DNA -binding domain 196 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g02952 496 Gene3D WRKY domain 179 254 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g02952 496 Gene3D WRKY domain 376 452 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g02952 496 ProSiteProfiles WRKY domain profile. 196 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g02952 496 SUPERFAMILY WRKY DNA-binding domain 193 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02952 Spst-Chr1 38100381 38104805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02952 93 452 WRKY Transcription Factor Family AT2G37260 45.479 4.67e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst1g02952 WRKY 7.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02952 - - vra:106757963 870.922