Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02946 ATGGCAGTAGCAGCAGCTAGGCCTCTCGTCTCTGTTCAAACCCTAGAGAGCGATGCAACCCCCACCGTTCCTCTTCCTGATGTCATGAAGGCTCCCATTCGCCCTGACATTGTCAATTTCGTCCACTCCAACATTTCTCGTAACAGCCGCCAGCCCTACGCCGTCAGCAAGCGTGCCGGCCACCAGACATCCGCCGAGTCCTGGGGAACCGGCCGCGCCGTCTCGCGTATCCCTCGTGTCCCAGGCGGGGGCACGCACCGCGCCGGCCAGGCCGCCTTCGGCAACATGTGCCGCGGCGGTCGCATGTTCGCGCCGACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTCCAACAGAAGCGCCACGCGGTCGTCTCGGCCATCGCTGCCTCCGCGATCCCCTCCCTGGTCCAGGCCCGCGGCCACCGCATAGAGTCTGTCCCGGAGCTCCCCCTCGTCGTCAGCGACACTATCGAGAGCGTGGAGAAGTCAAAAGAAGCGGTGAAAATCCTTGAGAAAATCGGCGCGTTCCCCGACGCGGAGAAAGCGAAACTGAGTCACGGAATTCGTCCCGGTAAGGGGAAAATGAGGAACCGCAGGTACATTTCACGCAAGGGTCCTCTTATCGTGTACGGATCCGAAGGTGCTAAAGCTGTTAAAGCGTTCAGGAACATTCCCGGTGTTGAGGTGGCAAATGTTGAAAGGCTTAATCTTCTGAAGCTTGCACCCGGTGGCCACCTTGGGAGGTTTATTATTTGGACCAAGTCCGCGTTTGAGAAACTGGACTCCATTTATGGGTCGTTCGATAAGGCCTCCGAGAAGAAAAAGGGTTATCTGCTTCCCAGGCCCAAGATGGTTAACTCCGACTTGGCCCGCATCATTAACTCCGATGAAGTCCAGTCCGTGGTGAGGCCCGTTAATAAGGAGGTTAAGCGCGCTACTCTGAAGAAGAACCCTCTCAAGAACCTCAATGTCATGTTGAAGCTCAATCCCTATGCTAAGACCGCTAAGAGGATGGCTCTTCTCGCTGAGAAGCAGCGGATTGTGGCAAAGAAGGAAAAGCTTGATCAGAAGCGCAACATTGCTTCCAAGGAGGAGGCTTCTGCTATAAGAGCTGCTGGAAAAGCTTGGTATCAAACAATGGTGTCAGACTCTGATTATACAGAATTTGACAACTTCTCTAAGTGGCTGGGTGTTTCCCAGTGA 1209 0.555 MAVAAARPLVSVQTLESDATPTVPLPDVMKAPIRPDIVNFVHSNISRNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRKINVQQKRHAVVSAIAASAIPSLVQARGHRIESVPELPLVVSDTIESVEKSKEAVKILEKIGAFPDAEKAKLSHGIRPGKGKMRNRRYISRKGPLIVYGSEGAKAVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFIIWTKSAFEKLDSIYGSFDKASEKKKGYLLPRPKMVNSDLARIINSDEVQSVVRPVNKEVKRATLKKNPLKNLNVMLKLNPYAKTAKRMALLAEKQRIVAKKEKLDQKRNIASKEEASAIRAAGKAWYQTMVSDSDYTEFDNFSKWLGVSQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02946 402 MobiDBLite consensus disorder prediction 52 70 - -
Spst1g02946 402 ProSitePatterns Ribosomal protein L1e signature. 117 143 IPR013000 -
Spst1g02946 402 Gene3D - 4 305 IPR023574 GO:0003735|GO:0005840|GO:0006412
Spst1g02946 402 Pfam Ribosomal protein L4/L1 family 23 263 IPR002136 GO:0003735|GO:0005840|GO:0006412
Spst1g02946 402 PANTHER 60S RIBOSOMAL PROTEIN L4 5 395 IPR045240 -
Spst1g02946 402 MobiDBLite consensus disorder prediction 52 89 - -
Spst1g02946 402 FunFam 60S ribosomal protein L4 4 305 - -
Spst1g02946 402 SUPERFAMILY Ribosomal protein L4 9 264 IPR023574 GO:0003735|GO:0005840|GO:0006412
Spst1g02946 402 Pfam 60S ribosomal protein L4 C-terminal domain 277 348 IPR025755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02946 Spst-Chr1 38065385 38066817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02946 1 402 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 79.064 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02946 K02930 - gmx:100796712 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02946 1 38065385 38066817 Spst1g02946 1 38065385 38066817 ECH
Spst1g02946 1 38065385 38066817 Spst7g00785 7 8166340 8168414 PCT