Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02938 ATGTTTACACACTTCGTAGACCGAATTGATTCTCTCCCTGCTCAAAGGCTGGCCTCTTGGAAGAATGATGATCCTGCAGAAGCTGCTCACTGCTTCAGTTTTTCTGAAATTGAAAATGCTACAAATAACTTTGAGAAAAATATTGGTGCTGGTGGTTTTGGAGTTGTCTACTATGGGAAGCTAAAAGATGGAAAAGAGATAGCAGTTAAAGTTTTAACCAGCAATTCATATCAAGGCAAGCGAGAGTTCTCCAATGAGAGTACTATTCTAAACAAGAACGGCATTACAGAGTTTTGGCTTATGGACTGGAACAAAGCGCTTCTTGGTTATTGTCGAGATGAAGAGAATAGTATGCTTGTTTATGAGTTCATGCATAATGGCACTCTCAAGGAAAATCTTTATGGTCCATTAGCGAATGGTCGGAGTATCAATTGGATTAAGCGCCTTGAGATAGCTGAAGATGCTGCCAAAGGGATTGAATATCTTCATACGGGTTGTGTTCCTGTCGTTATCCATAGAGACTTAAAAAGCAGCAACATTCTTCTCGACAAGCACATGAGAGCCAAGGTTTCTGATTTTGGTCTTTCAAAACTTGCTGTTGATGGAGTCTCCCATGTTTCAAGCATTGTTCGGGGAACCGTAGGATATCTGGATCCTGAGTACTATATTTCCCAACAGCTGACAGACAAGAGTGATGTTTATAGTTTTGGTGTAATTCTCCTTGAACTCATGTCTGGTCAAGAAGCAATATCAAATGAAAGCTTTGGTGTAAATTGCCGAAACATAGTTCAATGGGCAAAATTACACATTGAGAGTGGAGATATACAAGGTATCATTGATCCCTTGTTGCATAATGATTATGACCTACAATCAATGTGGAAAATAGCAGAGAAAGCATTGATGTGTGTTCAGCCTCATGGACATATGCGACCATCAATTTCAGAAGTTCTAAAGGAGATCCAAGATGCCATATCTATTGAGAGACAGGCAGAAGCATTAAGAGAAGGGAATTCAGATGATATGTCAAAAAATTCTTTTCACTCTTCCTTGAACTTGGGTTCAATGGATCTAGGTGGAACTGAGAGTTACCTGTCAATTGATGAATCAGTTGCACAGCCAACAGCAAGATAG 1131 0.397 MFTHFVDRIDSLPAQRLASWKNDDPAEAAHCFSFSEIENATNNFEKNIGAGGFGVVYYGKLKDGKEIAVKVLTSNSYQGKREFSNESTILNKNGITEFWLMDWNKALLGYCRDEENSMLVYEFMHNGTLKENLYGPLANGRSINWIKRLEIAEDAAKGIEYLHTGCVPVVIHRDLKSSNILLDKHMRAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELMSGQEAISNESFGVNCRNIVQWAKLHIESGDIQGIIDPLLHNDYDLQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAISIERQAEALREGNSDDMSKNSFHSSLNLGSMDLGGTESYLSIDESVAQPTAR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02938 376 ProSitePatterns Protein kinases ATP-binding region signature. 48 70 IPR017441 GO:0005524
Spst1g02938 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Spst1g02938 376 PANTHER OS01G0750732 PROTEIN 23 340 - -
Spst1g02938 376 Gene3D Phosphorylase Kinase; domain 1 26 123 - -
Spst1g02938 376 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 124 333 - -
Spst1g02938 376 SUPERFAMILY Protein kinase-like (PK-like) 28 318 IPR011009 -
Spst1g02938 376 ProSiteProfiles Protein kinase domain profile. 42 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g02938 376 SMART serkin_6 42 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g02938 376 Gene3D Transferase(Phosphotransferase) domain 1 124 347 - -
Spst1g02938 376 Pfam Protein tyrosine and serine/threonine kinase 44 250 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02938 Spst-Chr1 37986613 37988871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02938 29 331 Receptor kinase-like Gene Family AT1G67720 52.805 1.41e-104 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Spst1g02938 PK_Tyr_Ser-Thr 1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02938 - - ccaj:109813065 670.233