Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02937 ATGAAGAAGCGAAAAGCAAGGTTTCTTCTTTTTCAAATTTGCCATGTTTTTCACCGATTCTTCCTCTTTCAAATCAGGGTTCCGGCGACCATGGCCGACGGTCCGTCCAGTCCAGGTGGCGGTAGCCACGAGAGCGGCGACCACAGCCCCCGCTCTAACGTTCGCGAGCAGGACAGGTACCTCCCCATCGCTAACATAAGTCGCATCATGAAGAAGGCGCTCCCTGCCAACGGAAAAATCGCTAAAGACGCGAAGGAGACTGTCCAGGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAAAGAAAGACTATTAACGGGGATGATTTACTCTGGGCAATGGCTACCCTTGGTTTCGAGGATTATATCGATCCCTTGAAGATTTATCTCACAAGATACAGAGAGGGTGATACCAAGGGCTCAGCCAAGGGTGGTGACACCTCTGCGAAGAAAGATGTTCAACCGAGTCCTAATGCTCAGCTTGCTCATCAAGGTTCTTTTTCACAAGGTGTTAGTTACACAAATTCTCAGGTAACTATGCTCTCTTTGTTTGATGTATTATCTTCTTTCTTTGTGTACTTCTGGGCAGTCAAAGTTGAATTCTGTTTGCATAATGCATTAGGATTGAATGACGTTTTGAGGATCCTGTGGTGGTGGTTGGCTGGGGGTTTCTTAGCAGTTCAGACCCCTATGTTATTTAGTTTGTTCTGCAGATCAGCCTTGGTGTGTGTGAAGGATGCTTTTGGATCAATTTTCACATCTGGGATATGTCTTTTAATTGTTGGTCCTGGGGATTGCCCACTTGGGATCAAAGATGAGAAAAAGAAAGTAAGGCTCAAAAGGAAACAGGGGGAGTTTGCAATTGGTGTTGTGCCATCGCAGGTGATGGAAAATATGGCAGATGGCGGCGTTCAACGGCAGATAGAGAATGGACAACTAAATGGAAGTACATATTGTCACACTTTGCCTGAGTTGACAATCCTACGGTGCGACATTGGGTCAGCATATGATGGTTCCAATGCAAGGCCCAGAGTAGTTGTCGAGTCTATTAATCCTCCTGTTGTAATGTAA 1101 0.4623 MKKRKARFLLFQICHVFHRFFLFQIRVPATMADGPSSPGGGSHESGDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKGSAKGGDTSAKKDVQPSPNAQLAHQGSFSQGVSYTNSQVTMLSLFDVLSSFFVYFWAVKVEFCLHNALGLNDVLRILWWWLAGGFLAVQTPMLFSLFCRSALVCVKDAFGSIFTSGICLLIVGPGDCPLGIKDEKKKVRLKRKQGEFAIGVVPSQVMENMADGGVQRQIENGQLNGSTYCHTLPELTILRCDIGSAYDGSNARPRVVVESINPPVVM 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02937 366 PRINTS CCAAT-binding transcription factor subunit A signature 126 144 - -
Spst1g02937 366 PRINTS CCAAT-binding transcription factor subunit A signature 107 125 - -
Spst1g02937 366 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Spst1g02937 366 ProSitePatterns NF-YB/HAP3 subunit signature. 91 107 IPR003956 GO:0005634|GO:0006355|GO:0043565
Spst1g02937 366 Gene3D Histone, subunit A 47 180 IPR009072 GO:0046982
Spst1g02937 366 FunFam Nuclear transcription factor Y subunit B-3 49 173 - -
Spst1g02937 366 SUPERFAMILY Histone-fold 57 157 IPR009072 GO:0046982
Spst1g02937 366 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 45 170 IPR027113 GO:0001228|GO:0006355|GO:0016602
Spst1g02937 366 MobiDBLite consensus disorder prediction 33 57 - -
Spst1g02937 366 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 60 124 IPR003958 -
Spst1g02937 366 MobiDBLite consensus disorder prediction 147 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02937 Spst-Chr1 37980358 37985182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02937 37 190 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.543 3.05e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Spst1g02937 CBFD_NFYB_HMF 4.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02937 K08065 - gmx:100798667 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02937 1 37980358 37985182 Spst1g02937 1 37980358 37985182 ECH
Spst1g02937 1 37980358 37985182 Spst7g00787 7 8211261 8212410 PCT