LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g02937	ATGAAGAAGCGAAAAGCAAGGTTTCTTCTTTTTCAAATTTGCCATGTTTTTCACCGATTCTTCCTCTTTCAAATCAGGGTTCCGGCGACCATGGCCGACGGTCCGTCCAGTCCAGGTGGCGGTAGCCACGAGAGCGGCGACCACAGCCCCCGCTCTAACGTTCGCGAGCAGGACAGGTACCTCCCCATCGCTAACATAAGTCGCATCATGAAGAAGGCGCTCCCTGCCAACGGAAAAATCGCTAAAGACGCGAAGGAGACTGTCCAGGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAAAGAAAGACTATTAACGGGGATGATTTACTCTGGGCAATGGCTACCCTTGGTTTCGAGGATTATATCGATCCCTTGAAGATTTATCTCACAAGATACAGAGAGGGTGATACCAAGGGCTCAGCCAAGGGTGGTGACACCTCTGCGAAGAAAGATGTTCAACCGAGTCCTAATGCTCAGCTTGCTCATCAAGGTTCTTTTTCACAAGGTGTTAGTTACACAAATTCTCAGGTAACTATGCTCTCTTTGTTTGATGTATTATCTTCTTTCTTTGTGTACTTCTGGGCAGTCAAAGTTGAATTCTGTTTGCATAATGCATTAGGATTGAATGACGTTTTGAGGATCCTGTGGTGGTGGTTGGCTGGGGGTTTCTTAGCAGTTCAGACCCCTATGTTATTTAGTTTGTTCTGCAGATCAGCCTTGGTGTGTGTGAAGGATGCTTTTGGATCAATTTTCACATCTGGGATATGTCTTTTAATTGTTGGTCCTGGGGATTGCCCACTTGGGATCAAAGATGAGAAAAAGAAAGTAAGGCTCAAAAGGAAACAGGGGGAGTTTGCAATTGGTGTTGTGCCATCGCAGGTGATGGAAAATATGGCAGATGGCGGCGTTCAACGGCAGATAGAGAATGGACAACTAAATGGAAGTACATATTGTCACACTTTGCCTGAGTTGACAATCCTACGGTGCGACATTGGGTCAGCATATGATGGTTCCAATGCAAGGCCCAGAGTAGTTGTCGAGTCTATTAATCCTCCTGTTGTAATGTAA	1101	0.4623	MKKRKARFLLFQICHVFHRFFLFQIRVPATMADGPSSPGGGSHESGDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKGSAKGGDTSAKKDVQPSPNAQLAHQGSFSQGVSYTNSQVTMLSLFDVLSSFFVYFWAVKVEFCLHNALGLNDVLRILWWWLAGGFLAVQTPMLFSLFCRSALVCVKDAFGSIFTSGICLLIVGPGDCPLGIKDEKKKVRLKRKQGEFAIGVVPSQVMENMADGGVQRQIENGQLNGSTYCHTLPELTILRCDIGSAYDGSNARPRVVVESINPPVVM	366

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Spst1g02937	366	PRINTS	CCAAT-binding transcription factor subunit A signature	126	144	-	-
Spst1g02937	366	PRINTS	CCAAT-binding transcription factor subunit A signature	107	125	-	-
Spst1g02937	366	PRINTS	CCAAT-binding transcription factor subunit A signature	88	106	-	-
Spst1g02937	366	ProSitePatterns	NF-YB/HAP3 subunit signature.	91	107	IPR003956	GO:0005634\|GO:0006355\|GO:0043565
Spst1g02937	366	Gene3D	Histone, subunit A	47	180	IPR009072	GO:0046982
Spst1g02937	366	FunFam	Nuclear transcription factor Y subunit B-3	49	173	-	-
Spst1g02937	366	SUPERFAMILY	Histone-fold	57	157	IPR009072	GO:0046982
Spst1g02937	366	PANTHER	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	45	170	IPR027113	GO:0001228\|GO:0006355\|GO:0016602
Spst1g02937	366	MobiDBLite	consensus disorder prediction	33	57	-	-
Spst1g02937	366	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	60	124	IPR003958	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g02937	Spst-Chr1	37980358	37985182	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g02937	37	190	CCAAT-HAP3 Transcription Factor Family	AT2G37060	76.543	3.05e-78	236

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YB	Spst1g02937		CBFD_NFYB_HMF	4.6e-27	CL0012

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g02937	K08065		-	gmx:100798667	291.197

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst1g02937	1	37980358	37985182	Spst1g02937	1	37980358	37985182	ECH
	Spst1g02937	1	37980358	37985182	Spst7g00787	7	8211261	8212410	PCT

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