Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02936 ATGCCTGAAGATCTGCAAGATTCTAATCCCAAAGCTAGGCCAACTGAGCTGTTTGATTTGTTTTCATTTTCTTCAAAGGATTTAGAATTTGTTGTGAAGTTTGCACAGGAACATGGTTCAGATATATTTCGGCAAATCCTTCAATCTATATGCCCATCTATCTATGGACATGAGCTTGTTAAAGCTGGGATAACTCTGTCATTATTTGGTGGTGTACGGAAGCATGCTATGGATCAGAATAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATTGTTGGTGATCCTGGTCTAGGTAAGAGCCAGTTGCTGCAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTCTGTGGTAATGCCACAACCAAAGCTGGCCTTACAGTAGCTGTAGTGAAGGACCCTATGACAAGTGACTATGCTTTTGAAGCAGTCATTGATTGGCCAAGCAGTATGGGTTGCTCCTTTCATGGTAGGCTAAATGATGACAATGTTTTGTTTTTTGGCGCTTGTTCTGTTTCCTTAAGCTATGCAGAATTAGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGCCATCGGAGCATCAGGCTTTACTGGAGGCGATGGAGCAACAAAGTGTCTCTATTGCAAAGGCGGGACTAGTAGCAAGTTTATCATCTAGGACTTCTGTCTTGGCTGCTGCAAATCCCGCTGGTGGTCATTATAACCGAGCAAAAACTGTAAATGAAAATTTGAAAATGAGTGCTGCTCTCCTGTCTCGTTTCGATTTAATTTTCATACTGCTCGACAAACCTGATGAACTTATGGATAAGCGACTCTCGGACCACATTATGGCAGAATCATGCATTTCAACCCCCTGTCGCGATTCCATCATGAAAACGGTTATTGTGGCGGGCGATGGGTGTCATGGTTTCAATGGGCATCACGATTTTGATGTGACTTTCCTCCCCAGTACCAGTGTTCCACTCCCCCCACTTATGACAATCTATCCTCTCACACTTCATGGTGGGAATGGGCAACTTTCACCGGCCCTAAAAAAGCGACGTGGAGATCCATCTGATCCCAGGGCTACTGTATCACAGAATGCGGAAGGTGTAGTAGATCTGGGCATTAGACCTGGATCTTTAATTTCAAGGTTGAGACTTGACCCACTGAGAGACTGTCATTTTGTTCCATTACCCGGTCAACTTCTTCGCAAATACATTGCTTATGCAAGGAGTTTTGTCTTTCCTAGGATGACAAAGCCAGCAGCAGAAATCTTGCAAAAGTTTTACCTGAAACTGAGGGATCATAGTACTTCAGCTGACGGTACTCCTATCACAGCTAGGCAGCTGGAAAGTCTTGTAAGGCTAGCTGAAGCTCGGGCTCGGCTGGACTTGAGAGTAGAAATAACGGCCCAGGATGCAACGGATGTTGTTGAAATCATGAAAGAGTCCCTGTATGATAAATATGTTGATGAGCACGGTATCGTGGATTTTGGTCGAAGTGGTGGTATGAGTCAACAGAAAGAGGCAAAACGCTTTCTAAATGCACTAAACAAGCAATCGGAATATGAACAGAAGGATTGCTTTTCAGTGTCTGAAATATACAGTTTGGCAGATAGGATTTCCTTGAAAGTACCTGATATTGACACTTTCATCGAAAATCTAAACAGTGTTGGTTATCTACTCAAAAAAGGACCAAAGATGTACCAGGTATTATCCTCTTCTTATGCGCGAAGCCAACCGTTTACGACAAGGGGTTAA 1770 0.435 MPEDLQDSNPKARPTELFDLFSFSSKDLEFVVKFAQEHGSDIFRQILQSICPSIYGHELVKAGITLSLFGGVRKHAMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTSDYAFEAVIDWPSSMGCSFHGRLNDDNVLFFGACSVSLSYAELGAMVLADSGLCCIDEFDKMPSEHQALLEAMEQQSVSIAKAGLVASLSSRTSVLAAANPAGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELMDKRLSDHIMAESCISTPCRDSIMKTVIVAGDGCHGFNGHHDFDVTFLPSTSVPLPPLMTIYPLTLHGGNGQLSPALKKRRGDPSDPRATVSQNAEGVVDLGIRPGSLISRLRLDPLRDCHFVPLPGQLLRKYIAYARSFVFPRMTKPAAEILQKFYLKLRDHSTSADGTPITARQLESLVRLAEARARLDLRVEITAQDATDVVEIMKESLYDKYVDEHGIVDFGRSGGMSQQKEAKRFLNALNKQSEYEQKDCFSVSEIYSLADRISLKVPDIDTFIENLNSVGYLLKKGPKMYQVLSSSYARSQPFTTRG 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02936 589 Gene3D - 20 496 IPR027417 -
Spst1g02936 589 FunFam Retrovirus-related Pol polyprotein LINE-1 21 148 - -
Spst1g02936 589 ProSiteProfiles MCM family domain profile. 42 285 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst1g02936 589 CDD MCM8 46 487 - -
Spst1g02936 589 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 22 526 IPR031327 GO:0003677|GO:0005524|GO:0032508
Spst1g02936 589 MobiDBLite consensus disorder prediction 349 368 - -
Spst1g02936 589 Pfam MCM P-loop domain 39 144 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst1g02936 589 Pfam MCM P-loop domain 177 287 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst1g02936 589 Pfam MCM AAA-lid domain 405 488 IPR041562 -
Spst1g02936 589 PRINTS Mini-chromosome maintenance (MCM) protein family signature 259 267 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst1g02936 589 PRINTS Mini-chromosome maintenance (MCM) protein family signature 85 100 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst1g02936 589 PRINTS Mini-chromosome maintenance (MCM) protein family signature 181 195 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst1g02936 589 PRINTS Mini-chromosome maintenance (MCM) protein family signature 232 244 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst1g02936 589 PRINTS Mini-chromosome maintenance (MCM) protein family signature 208 221 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst1g02936 589 CDD MCM8_WHD 510 575 - -
Spst1g02936 589 SMART AAA_5 86 274 IPR003593 GO:0016887
Spst1g02936 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 494 IPR027417 -
Spst1g02936 589 SMART mcm 1 489 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02936 Spst-Chr1 37971806 37979205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02936 3 575 Core DNA Replication Machinery Family AT3G09660 63.826 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02936 K10737 - gmx:100784549 832.787