Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02933 ATGGGAGCTGCCCGCAAGCTGAAGTCCCACCGTAGAAGACAAAGGTGGGCTGATAAGTCATACAAGAAGTCTCATCTTGGCAATGAATGGAAGAAGCCTTTCGCAGGTTCATCCCATGCGAAGGGAATTGTCCTCGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAATGTGCAAGGGTTCAACTCATAAAAAATGGGAAGAAGATTGCTGCTTTTGTGCCAAACGATGGTTGTTTAAACTACATTGAAGAAAATGATGAAGTTTTGATCGCTGGATTTGGACGAAAAGGTCACGCCGTGGGTGATATTCCTGGTGTTAGATTTAAGGTTGTAAAGGTTTCTGGAGTGTCTCTCCTGGCTCTTTTTAAGGAGAAGAAGGAGAAGCCAAGGTCATAA 411 0.4428 MGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02933 136 Gene3D - 19 136 IPR012340 -
Spst1g02933 136 CDD Ribosomal_S23 20 133 IPR005680 GO:0003735|GO:0006412|GO:0015935
Spst1g02933 136 FunFam 40S ribosomal protein S23 19 136 - -
Spst1g02933 136 ProSitePatterns Ribosomal protein S12 signature. 53 60 IPR006032 GO:0003735|GO:0005840|GO:0006412
Spst1g02933 136 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 10 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
Spst1g02933 136 MobiDBLite consensus disorder prediction 1 23 - -
Spst1g02933 136 NCBIfam 30S ribosomal protein S12 3 135 IPR005680 GO:0003735|GO:0006412|GO:0015935
Spst1g02933 136 Pfam Ribosomal protein S12/S23 25 135 IPR006032 GO:0003735|GO:0005840|GO:0006412
Spst1g02933 136 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
Spst1g02933 136 MobiDBLite consensus disorder prediction 1 19 - -
Spst1g02933 136 SUPERFAMILY Nucleic acid-binding proteins 14 134 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02933 Spst-Chr1 37960054 37960678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02933 1 136 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.588 1.18e-91 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02933 K02973 - gmx:100306064 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00793 7 8268112 8268713 Spst1g02933 1 37960054 37960678 ECH
Spst1g02933 1 37960054 37960678 Spst1g02933 1 37960054 37960678 ECH