Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02928 ATGGCACACGACTCGTCGTTTTTGTTTTCCGGCATTCGTTTCAACAGAAACAAGTTCGGCGCCGATATCGCTAGGTTTCAGAAAAAAGGTAGAGTTACTGATTCGGTGAAGATTTTGAGCGTCGCTGAAGACGAAAGCGCGAAAACGAGGGAAGTAGTGGAAGAGAAAACGGCGTCCACGAAGAAGAGGAAGCGCAAGCGAACCTCTTCTGAAACTGTTGAAGGATTCAACGTGTTTAGAAGTTCCACATCTGTGGCGCAGTCTAATGGTGAAACGCAAGCTGATGAGGAGTCTATTGAGCTGAATAAGAAGAAGAAGAAGAAGAAGGAACAAAATCGACAACTCGAGCGGGACGCGATATTCAGGAAGCAGCACAACATTCACGTTTCTGGTTATAATGTGCCATCTCCGCTTCAAAGCTTTGATGAGTTGAAATTAAGATACAACTGTCCATCGTATTTGCTGCGCAATCTTAAGGAGCTTGGATTCAGAGAACCAACTCCTATTCAAAGACAGGCTATTCCAGTACTTCTAGATGGTGGTGAATGCTTTGCTTGTGCACCAACTGGTTCTGGGAAAACCCTTGCTTTTGTGTGTCCAATGCTTATGAAGCTGAAGGACCCTGAAAAAGGTGGCATTCGAGCTGTTATCTTATGTCATACCCGTGAACTATCCGCTCAAATATTTCGAGAGTGCAAAAAGCTTGCCAAAAGAAAAAAATTTCGTGTCAAGTTAATGACTAAAAATCTCTTAAGAAATGCTGATTTTTCAAAGTTTCCATGTGATATTCTAATATCCACGCCACTCCGATTACAATTGGCTATCAAGAAGAAAAAGCTTAATCTCAGTAGAGTTGAGTATCTGGTCCTGGATGAATCGGATAAGCTCTTTGAGCCGGAACTATTTAAGCAGATTGATTCTGTTCTCAAGGCATGCTCCAATCCCTCAATCATACGCTCACTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGGAAGAATATGGCCTCTGAAACAATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGATGGAAAACTTACTGCAATTCGCCAAAGTTTTGCAGAGAGTTTAAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAACGGGCCAAGGAGCTGTACGGTGAACTTGCATTTGACAACATTAGAGTCGATGTCATCCATTCTGATTTGTCTCAACAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATATAGTTGCCCGAGGCATGGATTTCAAAGGTGTGAATTGTGTGATCAATTATGATTTCCCTGATTCTGCCTCCGCATATGTCCACAGAATTGGTCGTTCTGGCAGGGCAGGGAGGGCTGGAGAAGCGATTACTTTTTACACAGAGGAAGACATTCCATTCCTACGAAATGTTGCTAATCTTATGGCAGCATCGGGCTGTGAAGTTCCATCCTGGCTCATGGAGTTGCAGAAAAAGAAGTGGAAGAAGCACCGGCCCAAAAGAGATTCAATCTCAACAAAACCAGACCTATAA 1611 0.4264 MAHDSSFLFSGIRFNRNKFGADIARFQKKGRVTDSVKILSVAEDESAKTREVVEEKTASTKKRKRKRTSSETVEGFNVFRSSTSVAQSNGETQADEESIELNKKKKKKKEQNRQLERDAIFRKQHNIHVSGYNVPSPLQSFDELKLRYNCPSYLLRNLKELGFREPTPIQRQAIPVLLDGGECFACAPTGSGKTLAFVCPMLMKLKDPEKGGIRAVILCHTRELSAQIFRECKKLAKRKKFRVKLMTKNLLRNADFSKFPCDILISTPLRLQLAIKKKKLNLSRVEYLVLDESDKLFEPELFKQIDSVLKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEDGKLTAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQQERENAVDNFRAGKTWVLIATDIVARGMDFKGVNCVINYDFPDSASAYVHRIGRSGRAGRAGEAITFYTEEDIPFLRNVANLMAASGCEVPSWLMELQKKKWKKHRPKRDSISTKPDL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02928 536 MobiDBLite consensus disorder prediction 45 59 - -
Spst1g02928 536 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 344 IPR014001 -
Spst1g02928 536 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 136 523 - -
Spst1g02928 536 Gene3D - 83 343 IPR027417 -
Spst1g02928 536 Coils Coil 94 118 - -
Spst1g02928 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 489 IPR027417 -
Spst1g02928 536 CDD DEADc_DDX52 154 347 IPR044764 GO:0003724|GO:0005524|GO:0030490
Spst1g02928 536 Gene3D - 344 521 IPR027417 -
Spst1g02928 536 MobiDBLite consensus disorder prediction 84 113 - -
Spst1g02928 536 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 355 516 IPR001650 -
Spst1g02928 536 Pfam Helicase conserved C-terminal domain 378 477 IPR001650 -
Spst1g02928 536 MobiDBLite consensus disorder prediction 96 113 - -
Spst1g02928 536 SMART helicmild6 396 477 IPR001650 -
Spst1g02928 536 MobiDBLite consensus disorder prediction 45 72 - -
Spst1g02928 536 Pfam DEAD/DEAH box helicase 167 331 IPR011545 GO:0003676|GO:0005524
Spst1g02928 536 CDD SF2_C_DEAD 356 486 - -
Spst1g02928 536 SMART ultradead3 162 359 IPR014001 -
Spst1g02928 536 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02928 Spst-Chr1 37901085 37905071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02928 137 515 Eukaryotic Initiation Factors Gene Family AT3G19760 30.184 1.71e-53 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02928 K14779 - gmx:100800969 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02928 1 37901085 37905071 Spst1g02928 1 37901085 37905071 ECH