Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02918 ATGAGAGTGATGAGTCACAAGAATCAACTTCCACTCGTGACAAACCACTTGGGCTTGAACTTTTCTTTAGTTTGCATCAACCAGATTCATTCAACACGAGGAGCATCTGGTGAATTGGAGAGAACGGGAATTTCTCCTCCTCTTGTTTTTCTTTCTTATTGCTGCTACCGCTTTATTTCGTTGTCTCCTTCCCTCAACAAACAAATCCCCTTACATTCTTCTTCACTTTCTTCTCTGCAACTCTCTCACCTTGCGTCTTTACGATCATCACTCAAACGACGCCGTTTCCTTCCAATTCCTCTGCCGTCGATTGTCCTTTATTATTTCCATTTTCTCTCCTTCATTTCCGTCCTTCTGTCAGAATCTTGTTCACGATCATACACTTTGTCCGTCTTTAATTTTCGGTTTCTTGGTACTGTTGGTGTATTGTACGCTATTATTTCTACATATTCTGATGGTGTTATAGGTCCTTTTCTATCTTGGATTAACGGGGAGACTATAGAATTGATGAGTGACGACTATGGCATGTTCAGTACTCAGGATATTAGCATTACATGCCGCAGTTATGTTCCCAGCTATTGTTCTGAGGATGTTGTGGCAATAAAGTGGTCACATCGAATGTTTAGTGATGAAAGCTGTCATTGTGAACTGTTACAGGAAATTTATGGAGGATGGAATTTTTCATATACCATTGTTATAGTTCTAATCGATGCTAAAATATGGATGTTGGTAAACCTATCTGCCCGTAAAACTTCTTGTAGAATGCTTGTTCTCTTAATATGTAATCTGCTATGGAAGTGGCTCTGTTTAGTTGGGGCTGGGCATACCATAAATGGAGGAGGCTGCTATAGTGATATGCATCTTCTCTTAAATGACATAGACTGCCCTCTATGTCAGTTCAGCTTCTGGTTCTGGGAACGGTTGGTTTCTCTAGTAATGCAACAATTCATGGTTGGGATTGGTGTAATGCTGCATGATTCTTTATTTCGATGTGAACCTATGAGTTCATTGACATGGAACCTGTTTGATAGGCATGAAGTAGAAGGTGCTCTTTCTGTATCAGTGGATAGAGGCATGGGTAAATGGCTTCAATGGAAAAGAAAAGGCCGGCCAGATGTAATTGTAGTTACTAGGGATATTGAGGAGAAGACCTACTCTGATCATACACATCTTACATCATCTCTAGGCAAAACCCTTAAAACTTTGCGATCTGACTCGACTACAGTGTCTATTTTGACAGAGAGATTTCAAGTGACAGTTATGGGGCATAGACACTTCTATAACACATCTCCATTGTTTGAGGGTGAGCCTGACCAAAACTGGAATCATATGCACACTGATCAACAAAATGTGCACCTTGGTAGAACTAGCACTTCAGAGAATGGTTCTTTTGCTTATCCTGCAGACAATATGTCTATAGATGGCATATCTTTCCCTTCACATTGGAACTCTTCCACAAGGTCAAATGGATATGCATCCTCAGGTCACAACATTGATGTGCCTCCTCATCAGTCAGATGCATCGGGCACTTCTAATGATCATTTTGTGCATTCATCTAGTGCTGGAGCATTCTTTACAGTGTCAGAAAATTATGTACACCAGCCTTCTTCTTCCAATTATGACAGACAAACATTTCATGTTGATGGTGGTTTTGTTGATCTTACAATGGGAAGTGGACAAGGCCCTCACAAACGTAAGAGCCCTGGAATTCCTCCAGTCTATGAGAGAGGCAGTACAAGTAGATACTTCAATGCTGGGAGTTCAACTGATCTTCCTATATCTTCGGAATTATGGCAGGAGAAGCCAAGTAATGATTCTCAATATATGCCCTGGGATCATTTTACTATGACATCCACATTCAGAGGTACTGGCCTGTCAATAAAGGGTGAGAGTTTTTTGCGGAATGTGAGAAGCCGCACTGCACTTGATTTGGATTCCAACCTGACTAGGTCCCATTTATCAACTAATCATTCACACGATTCCTACCCTACTCTCCCACCAGTTGACCATTCTAGTTTGGTGGATATTTCTGGTCAGACTTCTGCTACAATGACAAGGGATTGGAGCCAAATGAACATATCTCCAACTAATGGAAGGGTCTTGTTATCAGATACAAGTGCTTTTGCTTTCGAGACTAGTCATTTCCCTGTTGGAAGTGGGGCTACTGCTAGCAATGCTTCTGTAGATTTTGGGTGCTTCCATCATGAATTTGGTGCAAACAGAAATCCTACTCCTCCTCGAAGTTTTCAAAATAATCAAACTCAGACTGCAAGGGGAATTCAAAGCAACTATTCTCAAAGATCCACTCCAACTCTTAGGGCTTCTTCCAGCTTGCGCTTGGGACATGTGACGTCTTTGGATGATGGGTTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGAGCACCCTTGGCTGGCGGAATGGTGATAGAAATGGGAGGTCAAGAATTTCTAGTCAAAGATATAGGTCATTGATTGAGGAGAGTGGTCTCCACGAACGATCTACCTCAGAGGGTTTCCTGCTTGTTGAGCGTGCATCAGTGTATGGTTCCAGGAATATGCTTGATCAGCACCGAGAAATGAGAATGGACATAGATAACATGAGTTATGAGGACCTACTTGCACTTGGTGAGAGGATCGGCTATGTGAATACAGGACTCTCTGAGGATTTGTTTTCCAAATGTTTGATGGAAACAATATATTGTTCATCTGAGCTAGGTCAGGACGAAGGAAACTGTGTTATATGTCTGGAAGAGTACAAGAACATGGACGATGTTGGAACACTTAAAACTTGTGGACATGACTACCACGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAATTATGCCCTATCTGCAAATCATCTGCTTTGGCTGATGATACAAAGGATAAATAA 2913 0.415 MRVMSHKNQLPLVTNHLGLNFSLVCINQIHSTRGASGELERTGISPPLVFLSYCCYRFISLSPSLNKQIPLHSSSLSSLQLSHLASLRSSLKRRRFLPIPLPSIVLYYFHFLSFISVLLSESCSRSYTLSVFNFRFLGTVGVLYAIISTYSDGVIGPFLSWINGETIELMSDDYGMFSTQDISITCRSYVPSYCSEDVVAIKWSHRMFSDESCHCELLQEIYGGWNFSYTIVIVLIDAKIWMLVNLSARKTSCRMLVLLICNLLWKWLCLVGAGHTINGGGCYSDMHLLLNDIDCPLCQFSFWFWERLVSLVMQQFMVGIGVMLHDSLFRCEPMSSLTWNLFDRHEVEGALSVSVDRGMGKWLQWKRKGRPDVIVVTRDIEEKTYSDHTHLTSSLGKTLKTLRSDSTTVSILTERFQVTVMGHRHFYNTSPLFEGEPDQNWNHMHTDQQNVHLGRTSTSENGSFAYPADNMSIDGISFPSHWNSSTRSNGYASSGHNIDVPPHQSDASGTSNDHFVHSSSAGAFFTVSENYVHQPSSSNYDRQTFHVDGGFVDLTMGSGQGPHKRKSPGIPPVYERGSTSRYFNAGSSTDLPISSELWQEKPSNDSQYMPWDHFTMTSTFRGTGLSIKGESFLRNVRSRTALDLDSNLTRSHLSTNHSHDSYPTLPPVDHSSLVDISGQTSATMTRDWSQMNISPTNGRVLLSDTSAFAFETSHFPVGSGATASNASVDFGCFHHEFGANRNPTPPRSFQNNQTQTARGIQSNYSQRSTPTLRASSSLRLGHVTSLDDGLPMVAESYSSRHPRPLSTLGWRNGDRNGRSRISSQRYRSLIEESGLHERSTSEGFLLVERASVYGSRNMLDQHREMRMDIDNMSYEDLLALGERIGYVNTGLSEDLFSKCLMETIYCSSELGQDEGNCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSSALADDTKDK 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02918 970 CDD RING-H2_RNF24-like 917 962 - -
Spst1g02918 970 MobiDBLite consensus disorder prediction 738 777 - -
Spst1g02918 970 Pfam Ring finger domain 916 959 IPR001841 -
Spst1g02918 970 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 510 963 IPR045191 GO:0061630
Spst1g02918 970 SMART ring_2 917 958 IPR001841 -
Spst1g02918 970 ProSiteProfiles Zinc finger RING-type profile. 917 959 IPR001841 -
Spst1g02918 970 MobiDBLite consensus disorder prediction 743 777 - -
Spst1g02918 970 MobiDBLite consensus disorder prediction 556 576 - -
Spst1g02918 970 SUPERFAMILY RING/U-box 905 962 - -
Spst1g02918 970 MobiDBLite consensus disorder prediction 484 514 - -
Spst1g02918 970 MobiDBLite consensus disorder prediction 794 817 - -
Spst1g02918 970 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 886 963 IPR013083 -
Spst1g02918 970 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 882 963 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02918 Spst-Chr1 37741013 37750481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02918 421 969 C3H Transcription Factor Family AT2G37150 43.063 5.22e-115 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02918 - - gmx:100803627 994.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02918 1 37741013 37750481 Spst1g02918 1 37741013 37750481 ECH
Spst1g02918 1 37741013 37750481 Spst7g00809 7 8456903 8463683 PCT