Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02917 ATGAGTGTCATCGACATTCTCACCAGAGTTGATTCCATTTGTAGAAAGTACGACAAATACGACGTCGAAAAGCAAAGGGATTCCAATATCTCCGCCGAAGATGCATTCGCCAAACTCTACGCCTCCGTCGATGCCGACATCGAGGCCTTACTTCAGAAAGCAGAAACAGCTTCCAAGGAGAAAAGTAAGGCGTCCACTGTAGCGATCAATGCCGAGATTCGTCGTACTAAGGCTAGGTTGTTGGACGAGGTTCCCAAACTGCAGAGATTGGCAATGAAAAAGGTAAAGGGGCTTTCATCGCAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCTTTGCCAGATAGGATTCAAGCTATCCCAGATAGGACCCCTGCAGAACCCAAACAAAGGGGAAGTTGGGCAGCTTCTGCCTCACGGCCTGGAATTAAATTTGATTCAAATGGACAATTTGATGATGGGTACTTCCAACAAACTGAAGAATCAAATCAATTTAGGCAGGAGTATGAAATGCGTAAAATGAAACAGGATCAAGGTTTGGATATAATCGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGGAACTAGATAGACAAGTACCACTTATGGATGAGATTGATGCTAAGGTGGACAAGGCATCTTCCGACCTTAAAAATACCAATGTTAGACTCAGAGACACAGTGAACCAGCTTCGGTCCAGTCGAAACTTTTGTATAGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTATTTGTACAATGTGCTAAAGAAATGA 798 0.4236 MSVIDILTRVDSICRKYDKYDVEKQRDSNISAEDAFAKLYASVDADIEALLQKAETASKEKSKASTVAINAEIRRTKARLLDEVPKLQRLAMKKVKGLSSQEFAARNDLVLALPDRIQAIPDRTPAEPKQRGSWAASASRPGIKFDSNGQFDDGYFQQTEESNQFRQEYEMRKMKQDQGLDIIAEGLDTLKNMAHDMNEELDRQVPLMDEIDAKVDKASSDLKNTNVRLRDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02917 265 Pfam SNARE domain 207 256 IPR000727 -
Spst1g02917 265 CDD SNARE_Qc 175 230 - -
Spst1g02917 265 Gene3D - 169 231 - -
Spst1g02917 265 FunFam Putative syntaxin-71-like 170 231 - -
Spst1g02917 265 SUPERFAMILY SNARE fusion complex 163 230 - -
Spst1g02917 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Spst1g02917 265 SMART tSNARE_6 165 232 IPR000727 -
Spst1g02917 265 Coils Coil 40 60 - -
Spst1g02917 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Spst1g02917 265 PANTHER SYNTAXIN 44 252 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02917 Spst-Chr1 37733872 37737554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02917 1 264 SNARE and Associated Proteins AT3G09740 74.436 7.72e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02917 K08506 - gmx:100804155 460.299