Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02916 ATGCATTCTAGGTTGTTCCTCCGGAGGAATTATTCCTTCATGTTCATGGACAAAGGTGCTAATTCAGAAATCCAACTCCCTCCTGGATTTAGATTCCACCCTTCTGACGAAGAGCTAATTGTTCACTATCTGAGAAATAAAGTGACATCATCACCCCTTCCTGCCTCATTCATGGCAGAAATAGATCTTTACAAGTATAATCCATGGGAGATCCCAAGTAAGGCTTTGTTTGGGGAGGATGAATGGTATTTCTTTACTCCCAGGGACAGGAAGTATCCCAATGGAGTGAGGCCTAATCGAGCAGCTGCTTCTGGTTATTGGAAGGCTACTGGCACTGACAAACCCATTTTTACTTCATGTGGGATGATGAGTATTGGAGTGAAGAAGGCGCTTGTGTTCTACAAGGGTCGTCCACCAAAAGGATCTAAAACTGATTGGATCATGCAGGAGTATAGGTTGCACGATTCCATGAACTCAATTCCACAGCAAAGAGGGTCCATGAGACTGGATGAGTGGGTGCTGTGCCGGGTTCGACAGAAAACTAGCAGCACAAGAAGCATTTGGGAAGACTCAAATGAACCTATTCACGAACCAACTAGCCACTTTCACCAAATAAACCAGAATTCGAATCTTGAACCAGCCAAAAACACTGTGCATACTGAATATCCAATGTTACCTTATATTCTTGCTTCTAAGAGTTCTCTGCCTGATTTTATTGGCATGGCCTCAGGCTCTGGCTTTGGTTGTAATGACGATGTAAAAGCGTATGCTTCATTGGATGATGAAAACTTGAATTTAATAATAGGAGCGCAGTTTAGGGAACCTGTTGCTGAGGGCTTGTTTAATTCACTGAAGAGAAAAAAGTTTGAAGAGAACGAGTTGGATGCTACCCTCAATAAAATTCTAAGCGAAGAAGTTGATGTTGGGAAACAAAGACTTGAGAAAGATGTAAACAAAGGCTACAATTTCAATAACTTTGACCAGTGGACTTCCATCATACAACCCCAGGAGCTTAATAGCGAGTCTTTACGAAATATGAATGAATTGCTTATAGATGCTTGA 1062 0.4181 MHSRLFLRRNYSFMFMDKGANSEIQLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFMAEIDLYKYNPWEIPSKALFGEDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDKPIFTSCGMMSIGVKKALVFYKGRPPKGSKTDWIMQEYRLHDSMNSIPQQRGSMRLDEWVLCRVRQKTSSTRSIWEDSNEPIHEPTSHFHQINQNSNLEPAKNTVHTEYPMLPYILASKSSLPDFIGMASGSGFGCNDDVKAYASLDDENLNLIIGAQFREPVAEGLFNSLKRKKFEENELDATLNKILSEEVDVGKQRLEKDVNKGYNFNNFDQWTSIIQPQELNSESLRNMNELLIDA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02916 353 Gene3D NAC domain 35 185 IPR036093 GO:0003677|GO:0006355
Spst1g02916 353 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 25 231 - -
Spst1g02916 353 ProSiteProfiles NAC domain profile. 26 180 IPR003441 GO:0003677|GO:0006355
Spst1g02916 353 FunFam NAC domain-containing protein 72-like 35 185 - -
Spst1g02916 353 Pfam No apical meristem (NAM) protein 27 153 IPR003441 GO:0003677|GO:0006355
Spst1g02916 353 SUPERFAMILY NAC domain 21 180 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02916 Spst-Chr1 37729490 37730824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02916 20 185 NAC Transcription Factor Family AT1G69490 66.265 2.22e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst1g02916 NAM 4.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02916 - - gmx:100788799 568.155