Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02914 ATGTTCAATGTTATGGGTTTTTCGTTTTTTACAACGGATTCGGTGGCGTGCAGGGGATTGCTCTACACATCCTCCATACTCAATTTCGTTTTGGTCTGCCAACTCATTCTCCTTCAACCTCTCGTTTCTGCTTCCGATGGAAATCCTGAAAATGCTGCTGAGTTGTTTGAGCGGGCATCGCAAAGCGTAAAAGTGAAACATTATACTGAGGCACTTGATGATCTAAATGCTGCAATAGAGGCAGACCCAAACCTTTCAAAAGCGTACCTTTTCAGAGCTTCAGTGCTTCGTCAAATATGCAGATATGAGCAATCCGAGAGGAGCTACAAACAGTTCCTGGAGTTAAAGCCTGGAGATTCAACTGCAGAAAAAGAGCTCTCTCAACTATTGCAGGCTCAAAGTGCCCTAGAAACAGCACAGTCACTCTATGATTTGGGCAACTTCTCAAAATCATTGGAATATATTGATAAAGTTGTTCTTGTTTTCTCTCCAGATTGTACTAAGGCTAAGCTTCTTAAAGTAAAGGTGTTAATAGCTGATAAAGAGTATGAGGGTGCAATTGCTGAGTCAGGGTTTCTTCTCAAGGAAGATGAAAATAATTTAGAAGCCTTATTGTTACGTGGTCGTGCGTTTTACTATTTAGCTGATCATGATGTTGCCACGAGGCATTTTCAGAAAGGCCTTCGCTCAGATCCGGAGCATAGTGAACTGAAAAAAGCATATTTTGGATTGAAAAATCTATTAAAAAAGAGTAAAAGTGCTGAAGATAATGCGAGCAAGGGTAAACTACGTGTGGCAGTGGAAGAATTCAAAGCTGCACTTGCTGTAGACCCTAACCATCTTGCGCACAATGTACATCTTCACCTTGGCTTATGTAAAGTGCTAGTCAAACTTGGCAGAGGAAAAGATGCCTTGGAAAGTTGTAATGAAGCGCTTAAGTTCAATGAGGAACTTGTTGAAGCTCTTGTTCAGAGAGGAGAAGCTAAACTCTTAACAGAGGATTGGGAGGGAGCTGTGGATGATATGAGATCAGCTGCTCAAAAATCTCCTCAGGATATGAGTATCCGTGAAGCAGTAATGAGGGCCGAGAAAGCTTTAAAGATAAGCAAACGCAAAGATCACTACAAAACATTGGGAATTTCAAAAACTGCTTCTGCTGCAGATATAAAACGTGCCTACAAGAAACTTGCCTTACAATGGCACCCAGATAAGAATGTTGACAAAAGAGAAGAAGCGGAGGCTAAATTCCGAGAAATTGCTGCTGCATATGAGGTTCTCAGCGATGAAGACAAACGCGTAAGATACGACAGGGGGGAGGACCTTGAAGAGATGGGAATGGGCGGTGGTGGTGGTTTCAACCCTTTCGGTGGTGGGGGCCAGCAGTTTACCTTTAATTTTGAGGGTGGCTTCCCTGGTGGAGGCTTTCCTGGTGGTGGTGGATTTGGAGGGGGCTATCCTGGAGGATTTGAATTTCACTTCTGA 1482 0.4305 MFNVMGFSFFTTDSVACRGLLYTSSILNFVLVCQLILLQPLVSASDGNPENAAELFERASQSVKVKHYTEALDDLNAAIEADPNLSKAYLFRASVLRQICRYEQSERSYKQFLELKPGDSTAEKELSQLLQAQSALETAQSLYDLGNFSKSLEYIDKVVLVFSPDCTKAKLLKVKVLIADKEYEGAIAESGFLLKEDENNLEALLLRGRAFYYLADHDVATRHFQKGLRSDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRVAVEEFKAALAVDPNHLAHNVHLHLGLCKVLVKLGRGKDALESCNEALKFNEELVEALVQRGEAKLLTEDWEGAVDDMRSAAQKSPQDMSIREAVMRAEKALKISKRKDHYKTLGISKTASAADIKRAYKKLALQWHPDKNVDKREEAEAKFREIAAAYEVLSDEDKRVRYDRGEDLEEMGMGGGGGFNPFGGGGQQFTFNFEGGFPGGGFPGGGGFGGGYPGGFEFHF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02914 493 ProSiteProfiles dnaJ domain profile. 373 439 IPR001623 -
Spst1g02914 493 FunFam DnaJ domain containing protein 39 370 - -
Spst1g02914 493 ProSiteProfiles TPR repeat profile. 201 234 IPR019734 GO:0005515
Spst1g02914 493 SMART tpr_5 201 234 IPR019734 GO:0005515
Spst1g02914 493 SMART tpr_5 52 85 IPR019734 GO:0005515
Spst1g02914 493 SMART tpr_5 86 119 IPR019734 GO:0005515
Spst1g02914 493 SMART tpr_5 132 165 IPR019734 GO:0005515
Spst1g02914 493 SMART tpr_5 285 318 IPR019734 GO:0005515
Spst1g02914 493 SMART tpr_5 319 352 IPR019734 GO:0005515
Spst1g02914 493 Pfam DnaJ domain 373 436 IPR001623 -
Spst1g02914 493 ProSitePatterns Nt-dnaJ domain signature. 416 435 IPR018253 -
Spst1g02914 493 ProSiteProfiles TPR repeat profile. 86 119 IPR019734 GO:0005515
Spst1g02914 493 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 24 493 IPR044620 -
Spst1g02914 493 FunFam DnaJ subfamily C member 7 371 478 - -
Spst1g02914 493 Pfam Tetratricopeptide repeat 261 317 - -
Spst1g02914 493 SUPERFAMILY Chaperone J-domain 367 475 IPR036869 -
Spst1g02914 493 SUPERFAMILY TPR-like 48 368 IPR011990 GO:0005515
Spst1g02914 493 CDD DnaJ 373 428 IPR001623 -
Spst1g02914 493 Pfam Tetratricopeptide repeat 65 119 - -
Spst1g02914 493 SMART dnaj_3 372 431 IPR001623 -
Spst1g02914 493 Gene3D DnaJ domain 371 478 IPR036869 -
Spst1g02914 493 PRINTS DnaJ domain signature 375 393 IPR001623 -
Spst1g02914 493 PRINTS DnaJ domain signature 393 408 IPR001623 -
Spst1g02914 493 PRINTS DnaJ domain signature 431 450 IPR001623 -
Spst1g02914 493 PRINTS DnaJ domain signature 411 431 IPR001623 -
Spst1g02914 493 Coils Coil 409 429 - -
Spst1g02914 493 Gene3D Tetratricopeptide repeat domain 40 370 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02914 Spst-Chr1 37710089 37714376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02914 369 436 C2H2 Transcription Factor Family AT1G74250 47.222 4.73e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02914 K09523 - gmx:100804685 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02914 1 37710089 37714376 Spst1g02914 1 37710089 37714376 ECH