Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02912 ATGGATGAAAATTTTTATGCCACTTGTAGAAGGGAATGTAGTATTTGCCTGTATGATTTACACTTGTCTGCTGTAGGGTGTTCATGTTCAAATGACAAGTTTGAGTGTCTTGGTCATGCAAAACATTTTTGTTCTTGCCCTTGGAGCAACAACATTCTCTTATACCATTACGAGATCAGTGATTTGAATGTTCTTTGTCAAGCTTTGGATGGGAAATTAAGTGCAGTCTATAAATGGGCCAAAGAGTATCTCGGACTAACACTGACCTCTGTTGCCTCCAAGAGATCAAAACCACATCCAGAAAATGTTAGTTGTTCAACCTTCCCTTTACAAGACTTGCATATGAAAGAACCTATATCCCAGACATCATCAAATGAATCCTCAAACGGGAAACGACGCAAATTGCAGGAAATATTGAATTCATCAAAGAAAAATCACAATGAAGTGTTTCAAGTTCTTCGAAAAAGAAACAAAATGAAGTGGTTCCAAACTCATCCAAGAAGAAACAAAATGAAGTGA 519 0.3699 MDENFYATCRRECSICLYDLHLSAVGCSCSNDKFECLGHAKHFCSCPWSNNILLYHYEISDLNVLCQALDGKLSAVYKWAKEYLGLTLTSVASKRSKPHPENVSCSTFPLQDLHMKEPISQTSSNESSNGKRRKLQEILNSSKKNHNEVFQVLRKRNKMKWFQTHPRRNKMK 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02912 172 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 124 - -
Spst1g02912 172 Pfam C5HC2 zinc finger 13 63 IPR004198 -
Spst1g02912 172 MobiDBLite consensus disorder prediction 119 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02912 Spst-Chr1 37698856 37699374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02912 1 93 JUMONJI Transcription Factor Family AT1G08620 54.839 4.17e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02912 K11446 - gmx:100804864 218.009