Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02909 ATGGCAACTGAAGCACATCACTTTCCCAACACTAATGACCAAGGCACTTCTACTAGTGCTGATAACCCAATTCAAAAGGATGTAGAGTCATCCGAAATAACTGAGGAACACCCTAGTAGACATGCACAAGGGAGGAGGAGAAACCTAATCTTGGAGATACCCACAAGAACGCTGGATGAAACAAGACAGGAATTTTTTAGAACAAACAAACCTCAGACTCCATGTCATAAATACCAAATAAATGAGTTCCAAAGTCCCTTGTCAACCAAGAATACAAAAACTCTTGCTCCCAAGCTCAGTTTTAAATTTCGCAACACAAGTTCAGATTTTGAAGAGGCTTCCCTCCCACTGCAAGAAACCATGATTTCAAGAACATTATCATCTGATGGGAAGAAAATATCATCCTTACCTGTCACCCCAAATGCTCAGTCAAATCTGGAGTCTGAACATGTAGGGAACATTGCCTATCCAGCAACACATACTAAGAAAGGACAGCAATTACCGATGCATCGTTCTCGTTCAGTTCCAGTGCTTTCCGAAATTGGCAACACATTTGTAGGTGCCATGTTTCGTATTGTTACTACTACACCAACATCATTCAAATCTCCACCTGCTGATACGGCTAAAAATGAGGATGGAGAAGATATTCCTGAAGAAGAAGCCGTCTGCAGAATTTGTTTGATTGAATTGGGGGAAGGTTGTGATACCCTTAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCTCTGGCACACCAAGAGTGTGCAGTTAAATGGTTTAGCATTAAAGGCAACAGAACATGTGATGTGTGCAAGCAGGAAGTTCAGAACCTACCTAACTTCCACAGGGTTTGGCAAAATGTTCCCATTCTTGTTATCATCAACATGCTAGCATACTTTTGTTTTCTTGAGCAGCTACTTGTTTCAAGTATGGGATCTGGTGCCGTTGCCATTTCTCTTCCTTTTTCTTGTATATTGGGTCTACTTGCAAGCATGACATCCACAATAATGGTGAGGTGTGAACATGTTTGGGCTTATGCAATTGTCCAATTTGTTGTGGTGGTCCTCGCTGGACGTCTTTGCTATTCACTGCTTAATAAGCAAGCTGTTCTATCTATCCTACTTGCTACATTTACTGGGTTTGGAACTGTAATGTGTGGAGCTTTCATTCTTATTGAGTTTTTGAAGTGGAGAAGACGATGGGTTGGTCAGTTGAATCAACAACGTGGTTCTCAAGAGGTGGTACTACCTCATCAACCTCACACAGATTCTCCATGGCATCATGAAGATAATGTGAGAGACACTTCAGTGCATGTGAGCTGA 1320 0.4182 MATEAHHFPNTNDQGTSTSADNPIQKDVESSEITEEHPSRHAQGRRRNLILEIPTRTLDETRQEFFRTNKPQTPCHKYQINEFQSPLSTKNTKTLAPKLSFKFRNTSSDFEEASLPLQETMISRTLSSDGKKISSLPVTPNAQSNLESEHVGNIAYPATHTKKGQQLPMHRSRSVPVLSEIGNTFVGAMFRIVTTTPTSFKSPPADTAKNEDGEDIPEEEAVCRICLIELGEGCDTLKMECSCKGELALAHQECAVKWFSIKGNRTCDVCKQEVQNLPNFHRVWQNVPILVIINMLAYFCFLEQLLVSSMGSGAVAISLPFSCILGLLASMTSTIMVRCEHVWAYAIVQFVVVVLAGRLCYSLLNKQAVLSILLATFTGFGTVMCGAFILIEFLKWRRRWVGQLNQQRGSQEVVLPHQPHTDSPWHHEDNVRDTSVHVS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02909 439 ProSiteProfiles Zinc finger RING-CH-type profile. 215 277 IPR011016 GO:0008270
Spst1g02909 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 279 IPR013083 -
Spst1g02909 439 CDD RING_CH-C4HC3_MARCH 223 271 - -
Spst1g02909 439 MobiDBLite consensus disorder prediction 412 439 - -
Spst1g02909 439 MobiDBLite consensus disorder prediction 1 27 - -
Spst1g02909 439 MobiDBLite consensus disorder prediction 1 48 - -
Spst1g02909 439 MobiDBLite consensus disorder prediction 421 439 - -
Spst1g02909 439 SMART ringv_2 222 271 IPR011016 GO:0008270
Spst1g02909 439 Pfam RING-variant domain 223 270 IPR011016 GO:0008270
Spst1g02909 439 MobiDBLite consensus disorder prediction 28 47 - -
Spst1g02909 439 SUPERFAMILY RING/U-box 219 274 - -
Spst1g02909 439 PANTHER OS02G0165000 PROTEIN 23 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02909 Spst-Chr1 37682767 37687108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02909 162 279 C3H Transcription Factor Family AT2G37950 27.206 2.74e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02909 - - gmx:100789854 655.21