Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02906 ATGGGCAACATCTCAAGCGCCGCCGCCGCCAATCCCCGTCGCCGGCACATCGGAGCGTCAAGGCGGAGTCACCCGCCTCCTCCTCCGCCGGTGACGCCGCAGCCTGAGATCGCTGCGAATCCATTTGTGTACCATGGTGCTGCACCCTACCCGAACCCTCCCCTGCATTACCCGCAGTACCATTACCCCGGTTACTACCCTCCGGTGCCTCCCATGCCTCATCAGCATCCTCATCAACAACATCAACGTCATCATCAACAACACCAACATCAACATCATCCGCACATGGACCCGGCGTGGATTCCGGGGCGGAACGCTTGTGGACCCATGATGCCTAACCCTGCACCTTTTGTTGAGCATCAGAAGGCAGTTACCATAAGGAACGATGTCAATATCAGGAAAGAGACCCTTAGGATTGAACCTGATGAGGGAAATTCTTCCCACTTCCTTGTCTCGTTTTCCTTCGATGCCACCGTTTCTGGGAGCATCACCATTTATTTCTTTGCCAAAGAAGGTGAAGACTGCATCCTCACACCAATGAAGGAAAACAATATTGCACCAGTGACTGTGAATTTTGAGCAAGGTCTTGGCCAGAAGTTTAGGCAGCCAGCTGGAACTGGTATTGATTTTTCAGTTTTTGAGGAGTCCGAGATATTGAAAGTGGGTGACATGGATGTGTACCCTCTAGCAGTAAAGGCAGACGCATCCCCTGGTAATCATGATGTGTCAGTTAGAAATCCAACATCTGGTAATACAAACTCACAGATTACCCAAGCAGTATTTGAGAAGGAGAAAGGAGAGTTCCGGGTGAAAGTTGTTAAGCAGATTTTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAACAGAGACTGACTTGGATGAGAGTGACCAAGGAAAAGAATGTGTCATCTGCTTGTCGGAGCCACGTGATACAATTGTTCATCCCTGCCGGCATATGTGTATGTGTAGTGGATGTGCGAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGGTCTGAGGAGTAA 1092 0.4918 MGNISSAAAANPRRRHIGASRRSHPPPPPPVTPQPEIAANPFVYHGAAPYPNPPLHYPQYHYPGYYPPVPPMPHQHPHQQHQRHHQQHQHQHHPHMDPAWIPGRNACGPMMPNPAPFVEHQKAVTIRNDVNIRKETLRIEPDEGNSSHFLVSFSFDATVSGSITIYFFAKEGEDCILTPMKENNIAPVTVNFEQGLGQKFRQPAGTGIDFSVFEESEILKVGDMDVYPLAVKADASPGNHDVSVRNPTSGNTNSQITQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGNSTETDLDESDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGSEE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02906 363 MobiDBLite consensus disorder prediction 1 37 - -
Spst1g02906 363 Pfam Zinc finger, C3HC4 type (RING finger) 307 353 - -
Spst1g02906 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 358 IPR013083 -
Spst1g02906 363 MobiDBLite consensus disorder prediction 69 95 - -
Spst1g02906 363 ProSiteProfiles Zinc finger RING-type profile. 309 348 IPR001841 -
Spst1g02906 363 SUPERFAMILY RING/U-box 308 353 - -
Spst1g02906 363 SMART ring_2 309 347 IPR001841 -
Spst1g02906 363 CDD mRING-HC-C3HC5_MGRN1-like 307 348 IPR045195 -
Spst1g02906 363 MobiDBLite consensus disorder prediction 77 91 - -
Spst1g02906 363 FunFam probable E3 ubiquitin-protein ligase LOG2 293 358 - -
Spst1g02906 363 PANTHER MAHOGUNIN 1 358 IPR045194 GO:0061630
Spst1g02906 363 MobiDBLite consensus disorder prediction 22 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02906 Spst-Chr1 37665300 37670088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02906 99 328 C3H Transcription Factor Family AT3G09770 61.506 2.92e-98 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02906 - - gmx:100807343 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02906 1 37665300 37670088 Spst1g02906 1 37665300 37670088 ECH
Spst1g02906 1 37665300 37670088 Spst7g00815 7 8570004 8573679 PCT