Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02904 ATGACATTCAACTGGGAAGCTCGTAGGGATGTATCAATAGGTGTGGCCAGAGTGCTTGCCTTTCTCCATGAGGAACTTCAACCCCATATTGTGCACAGAGATATCAAATCCAGCAATGTTCTTCTTGATCGAAATTTCACACCCAAAGTCTCAGATTTTGGTCTGGCCAAGCTACTAAGAGATGAAAAATCCCATATCAGTACCCAAGTTGCAGGCACATTGGGTTATCTTGCTCCAGAGTATGCCACTTCTGGCCACCTGACCCGAAAATCAGATGTTTATAGCTTTGGGGTACTTCTTCTAGAAATTGTCAGTGGCCAAAAAGCATTAGATAATCATCAAAATGTGGAACGTTTCATAGTTGAGAAGTCTTGGGCAGCCTACGAGGGTAATGATCTGTTGAGAATGGTGGATCCAGTGCTGAACATGAACTATCCCGTGGAAGAAGCCAAACGGTTCCTAATGGTGGGGCTTTGTTGTGTGCAAGAAACTGCTAAGCTCAGGCCACGAATGTCAGAGGTTGTTGAGATGTTAAGCAAAAATATTGAGATGGGAGAGTTTCATATTTCACAACCAGGAGTTGTGAATGATATGAGGAACCCCAGAATGGGGAGGCAAATGAATTCATCAGAATCAAGTGCTACGGCAGCATCCTTTGCAGACTCCTCCGAGTGGAATACTACCACCAATCTTGCTCGTTAG 702 0.443 MTFNWEARRDVSIGVARVLAFLHEELQPHIVHRDIKSSNVLLDRNFTPKVSDFGLAKLLRDEKSHISTQVAGTLGYLAPEYATSGHLTRKSDVYSFGVLLLEIVSGQKALDNHQNVERFIVEKSWAAYEGNDLLRMVDPVLNMNYPVEEAKRFLMVGLCCVQETAKLRPRMSEVVEMLSKNIEMGEFHISQPGVVNDMRNPRMGRQMNSSESSATAASFADSSEWNTTTNLAR 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02904 233 Pfam Protein kinase domain 6 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g02904 233 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 3 220 - -
Spst1g02904 233 ProSiteProfiles Protein kinase domain profile. 1 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g02904 233 Gene3D Transferase(Phosphotransferase) domain 1 1 196 - -
Spst1g02904 233 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 1 190 - -
Spst1g02904 233 MobiDBLite consensus disorder prediction 202 233 - -
Spst1g02904 233 SUPERFAMILY Protein kinase-like (PK-like) 2 206 IPR011009 -
Spst1g02904 233 MobiDBLite consensus disorder prediction 201 233 - -
Spst1g02904 233 ProSitePatterns Serine/Threonine protein kinases active-site signature. 30 42 IPR008271 GO:0004672|GO:0006468
Spst1g02904 233 SMART serkin_6 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02904 Spst-Chr1 37654694 37655643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02904 3 197 Receptor kinase-like Gene Family AT1G56120 50.000 3.45e-59 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Spst1g02904 Pkinase 7.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02904 - - gmx:100790388 357.066