Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02903 ATGGCCAAGGACATCGAAACCGAGGTCCCAACTGGGTTGACCCACAAGGACTACTACGACCCACCCCCGGCCCCATTCTACGACGCCGCCGAGCTTCGCAAATGGTCCTTCTACAGGGCCCTCATCGCCGAGTTTGTCGCTACCCTCCTCTTCCTCTACGTCACCATCCTCACCGTCATAGGGTACAACCACCAGACCAACGGCACCGACTCATGCGAAGGCGTCGGCATCCTCGGTATCGCCTGGGCCTTCGGAGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATTTCTGGGGGTCACATAAACCCCGCCGTCACGTTCGGGCTGTTCCTGGCCAGGAAGGTGTCGCTGGTGAGAGCAATCGCGTACATGGTGGCTCAGTGCTTGGGAGCCATATCTGGCGTGGGGCTGGTGAAGGCGTTTCAGTCGAGCTACTACAACAGGTACAAGGGTGGCGTGAACTTGCTCTCCGATGGGTACAGCAAAGGGACTGGCTTGGGCGCCGAGATTATTGGCACCTTTCTTCTTGTCTACACCGTCTTCTCCGCCACCGATCCCAAGAGAAAAGCCAGAGATTCCCATGTTCCCGTTTTGGCCCCACTTCCGATTGGGTTCGCGGTGTTCATGGTTCACTTGGCCACCATCCCCGTAACCGGCACTGGCATCAACCCCGCTAGAAGCCTTGGCCCTGCTGTCATATTCAACAACGAGAAGGCATGGGATGACCAGTGGATCTTTTGGGTAGGACCTTTCATCGGTGCAGCCATTGCTGCATTCTACCACCAATACGTGTTGAGGGCACAAGCGGGAAAAGCTCTCGGGTCATTCAGGAGCTCCTCAAACCTGTAA 855 0.5719 MAKDIETEVPTGLTHKDYYDPPPAPFYDAAELRKWSFYRALIAEFVATLLFLYVTILTVIGYNHQTNGTDSCEGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAIAYMVAQCLGAISGVGLVKAFQSSYYNRYKGGVNLLSDGYSKGTGLGAEIIGTFLLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGPAVIFNNEKAWDDQWIFWVGPFIGAAIAAFYHQYVLRAQAGKALGSFRSSSNL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02903 284 Gene3D Glycerol uptake facilitator protein. 24 284 IPR023271 -
Spst1g02903 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g02903 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g02903 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g02903 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g02903 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g02903 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g02903 284 Pfam Major intrinsic protein 31 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g02903 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 14 278 IPR034294 -
Spst1g02903 284 NCBIfam MIP family channel protein 43 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g02903 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Spst1g02903 284 FunFam Probable aquaporin PIP1-2 24 282 - -
Spst1g02903 284 CDD MIP 39 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g02903 284 SUPERFAMILY Aquaporin-like 31 269 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02903 Spst-Chr1 37628570 37630586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02903 1 284 Major Intrinsic Protein MIP AT2G37170 78.746 2.35e-167 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02903 K09872 - gmx:100807883 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02903 1 37628570 37630586 Spst10g00679 10 7037335 7039811 ECH
Spst1g02903 1 37628570 37630586 Spst1g02903 1 37628570 37630586 ECH
Spst7g01010 7 17879629 17880683 Spst1g02903 1 37628570 37630586 ECH
Spst1g02903 1 37628570 37630586 Spst5g00551 5 4494975 4496141 ECH