Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02892 ATGGAAGCAACCACCCTTAGCAATGGCCACCAAAACGGTTCGTTTTGCTTGTCTACCGTCAAGAGCAGTGATCCGCTGAATTGGGGAGTGGCGGCGGAGGCACTGAAGGGGAGTCACCTGGATGAGGTGAAACGCATGGTGGCCGAATACCGGCAACCACTGGTTCGTCTCGGCGGGGAGACGCTCACCATCGCTCAGGTGGCTGCGGTGGCTGGACACGACCAAGGCGTGAGGGTGGAGCTGTCGGAGTCCGCTCGGGAAGGCGTTAAGGCCAGCAGTGAGTGGGTGATGAACAGCATGAACAATGGCACTGACAGTTACGGCGTCACCACCGGTTTCGGTGCTACCTCCCACCGCCGAACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAGATTTTTAAACGCTGGAATATTTGGAAATGGAACTGAATCATGCCACACACTGCCACACACAGCAACCAGAGCAGCCATGTTGGTGAGGACCAACACTCTTCTTCAAGGGTATTCAGGCATTAGATTTGAAATCTTGGAGGCCATCACTAAGCTCCTTAACAACAATGTTACCCCATGTTTGCCACTTCGTGGTACAATCACAGCTTCTGGAGATCTTGTTCCACTTTCTTATATTGCTGGTTTGCTAACTGGTAGACCTAACTCCAAAGCTGTTGGACCTTCTGGAGAAGTAGTTAACGCAAAACAAGCTTTTGAATTGGCTAACATCAATTCTGAGTTCTTTGAATTACAACCCAAGGAAGGCCTTGCGCTTGTTAATGGCACTGCTGTCGGTTCTGGCTTAGCTTCTACGGTTCTCTTTGAGGCAAATATACTAGCTGTGTTGTCTGAAGTTCTATCGGCTATTTTTGCCGAAGTGATGCAAGGGAAGCCTGAATTTACTGACCATTTGACACACAAGTTAAAGCACCACCCTGGTCAAATTGAGGCTGCTGCAATTATGGAGCACATTTTGGATGGAAGTTCCTACATGAAGGCTGCAAAGAAGTTGCACGACATAGATCCATTGCAAAAGCCAAAACAAGATAGATATGCCCTTAGAACTTCACCTCAGTGGCTTGGTCCTCTCATTGAAGTGATTCGTTTCTCAACCAAGTCAATTGAGAGGGAGATTAACTCTGTGAATGACAACCCTCTTATTGATGTTTCAAGGAACATGGCATTGCATGGTGGTAATTTCCAAGGAACACCTATTGGAGTCTCCATGGACAACACACGTTTAGCTCTTGCATCTATCGGCAAACTCATGTTTGCTCAATTGTCTGAGCTTGTGAATGATTTTTACAACAACGGTCTGCCTTCAAATCTCACTGCTAGCAGAAATCCTAGCTTAGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCCTACTGCTCTGAACTCCAATATCTTGCAAATCCAGTAACAAGCCATGTCCAGAGTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGTTTGATTTCAGCTAGGAAGACAAATGAATCTATTGAGATCCTTAAGCTCATGTCTTCCACATTCTTGGTCGCACTTTGCCAAGCAATTGACTTAAGGCATTTGGAGGAGAATTTGAAAAGCTCGGTCAAGAACACCATTAGTCAAGTTGCCAAGAGGACTCTTACAACAGGTGTCAATGGAGAACTCCATCCTTCAAGATTTTGTGAGAAGGATCTTCTGAAAGTGGTTGATAGGGAGTATGTATTTTCCTATATTGATGACCCTTGCAGTGCTACATACCCATTGATGCAAAAACTTAGGCAAGTGCTTGTAGATCACGCATTGGTAAATGGAGAGAACGAGAAGGATGTTAACACATCAATCTTTCAAAAGATTACAGCTTTTGAGGAGGAGTTGAAGACCCTCTTACCAAAGGAAGTTGAAAGTGCAAGGGCTGCTTATGAGAGTGGCAAAGCAGCAATTCCAAACAAGATCCAAGAATGCAGATCTTACCCTCTGTACAAGTTTGTGAGAGAAGAGTTAGGAACTGAGTTGCTAACGGGAGAAAAGGTTAGGTCACCAGGTGAAGAATTTGACAAATTATTCACAGCAATGTGTGAAGGTAAAATTATTGATCCTCTTTTAGAATGCCTTGGGGAGTGGAATGGAACTCCTCTCCCGATATGTTAA 2148 0.4525 MEATTLSNGHQNGSFCLSTVKSSDPLNWGVAAEALKGSHLDEVKRMVAEYRQPLVRLGGETLTIAQVAAVAGHDQGVRVELSESAREGVKASSEWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESCHTLPHTATRAAMLVRTNTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVVNAKQAFELANINSEFFELQPKEGLALVNGTAVGSGLASTVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHDIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNMALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQLSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISARKTNESIEILKLMSSTFLVALCQAIDLRHLEENLKSSVKNTISQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFSYIDDPCSATYPLMQKLRQVLVDHALVNGENEKDVNTSIFQKITAFEEELKTLLPKEVESARAAYESGKAAIPNKIQECRSYPLYKFVREELGTELLTGEKVRSPGEEFDKLFTAMCEGKIIDPLLECLGEWNGTPLPIC 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02892 715 FunFam Phenylalanine ammonia-lyase 15 261 - -
Spst1g02892 715 Gene3D - 528 649 IPR023144 -
Spst1g02892 715 CDD PAL-HAL 60 525 IPR001106 -
Spst1g02892 715 FunFam Phenylalanine ammonia-lyase 262 571 - -
Spst1g02892 715 SUPERFAMILY L-aspartase-like 24 715 IPR008948 GO:0003824
Spst1g02892 715 Gene3D - 16 261 IPR024083 -
Spst1g02892 715 NCBIfam phenylalanine ammonia-lyase 24 704 IPR005922 GO:0005737|GO:0006559|GO:0016841
Spst1g02892 715 FunFam Phenylalanine ammonia-lyase 528 649 - -
Spst1g02892 715 PANTHER HISTIDINE AMMONIA-LYASE 20 715 IPR001106 -
Spst1g02892 715 Pfam Aromatic amino acid lyase 62 536 IPR001106 -
Spst1g02892 715 Gene3D Fumarase/aspartase (Central domain) 262 709 - -
Spst1g02892 715 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02892 Spst-Chr1 37503384 37506494 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02892 20 715 Monolignol Biosynthesis Gene Families AT2G37040 82.902 0.0 1241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02892 K10775 - gmx:100787902 1335.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02892 1 37503384 37506494 Spst10g00661 10 6834754 6839874 ECH
Spst1g02892 1 37503384 37506494 Spst1g02892 1 37503384 37506494 ECH
Spst7g01025 7 18285996 18290147 Spst1g02892 1 37503384 37506494 ECH