Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02888 ATGTTGGTGGGGCACTTAAGAAGAAGTAGGAACAAAGTGATAACGTGGCCAGTAGCACCAGCTCATGTGAACAGAAAATGCACGTGGAATGGGAGCAAAGCAAGTCAGATAAAATCATTTCGGTGCACAAAATGGATGGTGGACTGCAAAAGCTTCAAGAGAACAATGAAGGGGAGGTTTCTGAGAGGGTATCTTAACAAGTGGAAGAAAATAGGGAGTCGAGTGATCCACTGTGCTGCCTACGGTTACTGCTGCGAATGGGAAGTGGGGCCATCCATGTACAATGAAGGAGACTCCAACATTCCAAACGATGTGCCAAAGGGTCACTTGGTTGTGTACGTGGGAGAACACCACAAGAGATATGTGATCAAGATCACGTTGCTTAACCATCCTCTATTCAAGACATTGCTGGATCAGGCTCAGGATGAGTACGACTTCATTGCAGATTCAAAGCTCTATATTCCTTGCAGTGAGCACCTTTTCCTCACTGTCCTTCGCTGTGCAAGCTCTCGACACAAGAACGAGTCTTTGTGTGTGTCTGAGTAG 546 0.4634 MLVGHLRRSRNKVITWPVAPAHVNRKCTWNGSKASQIKSFRCTKWMVDCKSFKRTMKGRFLRGYLNKWKKIGSRVIHCAAYGYCCEWEVGPSMYNEGDSNIPNDVPKGHLVVYVGEHHKRYVIKITLLNHPLFKTLLDQAQDEYDFIADSKLYIPCSEHLFLTVLRCASSRHKNESLCVSE 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02888 181 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 76 163 IPR003676 GO:0009733
Spst1g02888 181 Pfam Auxin responsive protein 97 167 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02888 Spst-Chr1 37480145 37488283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02888 103 170 Calmodulin-binding Proteins AT4G34750 47.222 8.30e-18 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02888 K14488 - gmx:100793017 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02888 1 37480145 37488283 Spst1g02888 1 37480145 37488283 ECH
Spst1g02888 1 37480145 37488283 Spst7g01030 7 18405944 18406312 PCT