Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02886 ATGTTCCTTCCCACGGTTCAAACGATACTGGGCTTCTACTCTTTCAAATTGTGTTTGATGATATGGTTATTTGATGCAATCCAGTCAGCAGCAATGAAGTGTTTTACATTCTCCTATGGGGAGAAGAAAGATGAGCCAAAAAGCCTGCAGTCAACATCGGGTCGGTCAGACAATTCCACAAATGCTGATGTTAGAAGATCTGGTTCTGAGTTAAATTCTCAGGAAGTTTCAGACAATGGCAGCGCAGAATCCCTCAGGAGGAATGCAATACCGAGTTTGTCCCAGAGGGTCAGCAACCTCAGAGTGTTTACTGTTTCTGAACTGAAATCAGCCACAAAGAATTTCAGTCGCTCTGTTATGATTGGAGAGGGCGGGTTTGGGTGTGTCTACCTAGGACTGATTAAAAGTGTGGAGGACCCCTCTGGAAGAATTGAAGTTGCAGTTAAACAGCTTAGTAAAAGGGGAATGCAGGGGCACAGGGAATGGGTGACAGAAGTGAACGTTCTGGGCGTTGTTGAGCATCCGAATCTTGTGAAACTAGTGGGTTACTGTGCAGATGATGATGAAAGAGGAATCCAGAGGCTTCTAATTTATGAATACATGCCAAACAGAAGTGTGGAACACCATCTATCTCACAGATCAGAGGCTCCTCTCTCATGGAGTAGAAGATTGAAAATAGCTCAAGATGCAGCTCGTGGTTTAACATACCTGCATGAACAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTTTGGATGAACAGTGGAATGCAAAGCTATCAGACTTTGGGTTAGCAAGGTTGGGACCATCAGATGGACTGACTCATGTCTCAACTGCGGTTGTGGGAACAATGGGATATGCATCTCCTGAATATGTTCAAACTGGACGTCTAACATCCAAGAATGATGTGTGGAGCTACGGCGTCTTCCTCTATGAACTCATCACCGGTAGGCGCCCTTTAGATCGAAATCGCCCCAAGGGTGAGCAGAAGCTCTTGGAATGGATAAGGCCATACCTATCAGATGGGAAGAAATTTCAACTAATATTAGATCCAAGACTTGATAAGAAGCAAATCTTCAAGTCAGCCCAGAGACTTGCTATGATAGCAAACCGATGCTTGGTAAAAAATCCAAAGAATCGCCCAAAGATGAGTGAGGTTTTGGAAATGGTCAATGGGATGGTAGAATCTTCATCCAGTTCTAGTCCACAATTGCCCTTGAAGAGTGTGGCAAGAGTGGAAGCTTTCCAGGATACTGAAACAAATAGCAAGAAACGGACCATGGATCAGAAGCCTGTTGAAAGTAGTTGGTTTGTTAGAATGTGGAGACCAAAGCTTATAAGAACCTGTTGA 1368 0.4342 MFLPTVQTILGFYSFKLCLMIWLFDAIQSAAMKCFTFSYGEKKDEPKSLQSTSGRSDNSTNADVRRSGSELNSQEVSDNGSAESLRRNAIPSLSQRVSNLRVFTVSELKSATKNFSRSVMIGEGGFGCVYLGLIKSVEDPSGRIEVAVKQLSKRGMQGHREWVTEVNVLGVVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSHRSEAPLSWSRRLKIAQDAARGLTYLHEQMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYASPEYVQTGRLTSKNDVWSYGVFLYELITGRRPLDRNRPKGEQKLLEWIRPYLSDGKKFQLILDPRLDKKQIFKSAQRLAMIANRCLVKNPKNRPKMSEVLEMVNGMVESSSSSSPQLPLKSVARVEAFQDTETNSKKRTMDQKPVESSWFVRMWRPKLIRTC 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02886 455 FunFam Serine/threonine-protein kinase BIK1 82 200 - -
Spst1g02886 455 CDD STKc_IRAK 121 399 - -
Spst1g02886 455 SUPERFAMILY Protein kinase-like (PK-like) 92 396 IPR011009 -
Spst1g02886 455 FunFam Serine/threonine-protein kinase PCRK2 201 409 - -
Spst1g02886 455 PANTHER OS01G0588500 PROTEIN-RELATED 65 397 - -
Spst1g02886 455 MobiDBLite consensus disorder prediction 51 84 - -
Spst1g02886 455 Pfam Protein tyrosine and serine/threonine kinase 120 394 IPR001245 GO:0004672|GO:0006468
Spst1g02886 455 Gene3D Phosphorylase Kinase; domain 1 87 200 - -
Spst1g02886 455 ProSiteProfiles Protein kinase domain profile. 115 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g02886 455 Gene3D Transferase(Phosphotransferase) domain 1 201 418 - -
Spst1g02886 455 ProSitePatterns Protein kinases ATP-binding region signature. 121 149 IPR017441 GO:0005524
Spst1g02886 455 MobiDBLite consensus disorder prediction 43 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02886 Spst-Chr1 37468197 37472101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02886 32 411 Glycoside Hydrolase AT3G07070 41.013 5.70e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Spst1g02886 PK_Tyr_Ser-Thr 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02886 - - gsj:114400704 796.964