Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02882 ATGGAGGTTGGAAAGAAGAAGACGCTCAAGTCTTTGATCTCAAAGGTGATAAAAGGTCTTTCATTCTTGGCACTGAATGGAGCACGTACGAGAAGGGTTTGTTATTTGAGTGACATTGATGAGGATAAGGATAACGAAAATGCAACAAGGGTGCCAGAAGATGTTAAGGAAGGACATTTTGCAGTTATTGCAATGCAAGGTGAAGAAACAAAAAGGTTCGTTGTTGAGTTGGATTACTTAACAGATCCTACTTTCTTGATGCTGCTGGAGCAAGCTAGTGAAGAGTATGGCTTTGAACAAAAGGGTGCACTTGCAGTCCCTTGCAGCCCCCAAGAACTTCAGAAGATTATAGAGAATAGACGACTCAATCTCACTTCGTAA 381 0.4147 MEVGKKKTLKSLISKVIKGLSFLALNGARTRRVCYLSDIDEDKDNENATRVPEDVKEGHFAVIAMQGEETKRFVVELDYLTDPTFLMLLEQASEEYGFEQKGALAVPCSPQELQKIIENRRLNLTS 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02882 126 Pfam Auxin responsive protein 38 117 IPR003676 GO:0009733
Spst1g02882 126 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 38 116 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02882 Spst-Chr1 37429286 37429666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02882 10 108 Calmodulin-binding Proteins AT5G20810 35.000 3.38e-15 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02882 - K14488 gmx:102661602 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02882 1 37429286 37429666 Spst1g02882 1 37429286 37429666 ECH
Spst1g02882 1 37429286 37429666 Spst7g00856 7 9670480 9670797 PCT