Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02876 ATGCAAGGCCTTGAGCTTGTTCCTGATGCTGTAACTTCACAACAACAAGAAGACCAAGTTCCAAGGGAAATGGATACTTCTGAACAACCCAACAAAGATGTTGGTGGTGCTGCTGCAATTACTGGTAACGGTGGTTCCATTAGCGGGGAGAAGGCAGAGAGTGTTCCCTCCGTTGGGTTTGGAGAGCTTTTCAGATTCGCTGATGGGTTGGATTATGTTCTCATGGGAATTGGGACGGTTGGAGCAGTTGTGCACGGTTGTTCTCTTCCTCTCTTTCTTCGCTTCTTTGCGGATCTTGTCAATTCCTTTGGCTCCAATGCTGATGATGCGGATAAGATGACTCGGGAAGTGGTCAAGTATGCATTTTACTTCCTGGTGGTGGGGGCTGCTATATGGGCATCTTCATGGGCAGAGATTTCGTGTTGGATGTGGAGTGGGGAGCGTCAATCCACCAAGATGAGAATCAAGTATCTGGAGGCTGCGTTGAACCAGGACATTCAGTTCTTTGACACTGAGGTGCGGACTTCCGATGTTGTTTTCGCCATCAACACTGATGCTGTCATGGTCCAGGATGCCATTAGTGAGAAGTTGGGGAATTTCATTCACTACATGGCTACGTTTGTTTCTGGCTTTGTTGTGGGTTTTACTGCTGTGTGGCAATTGGCTCTGGTCACTCTAGCTGTTGTCCCCATGATAGCTGTGATTGGAGGTATTCATACCACCACCTTGGCTAAGCTCTCTGGCAAGAGCCAAGAAGCACTTTCTCAGGCTGGCAACATTGCGGAACAGACGGTTGCACAAATCCGAGTGGTGCTGGCCTTCGTTGGGGAGTCCAGAGCATTACAGGCCTATTCATCAGCCTTGAGGGTTGCACAGAAGATTGGCTACAAAACCGGGTTTGCAAAGGGAATGGGATTGGGGGCCACCTACTTTGTTGTTTTCTGCTGTTATGCGCTTCTGCTGTGGTATGGAGGCTATCTTGTTAGGCACCATGCCACCAATGGAGGACTTGCCATTGCAACCATGTTTGCTGTTATGATTGGAGGATTGGGTTTGGGGCAATCTGCACCAAGCATGGCTGCATTTACAAAGGCCAGAGTTGCGGCTGCAAAGATTTTCCGTATAATTGATCATAAGCCGAGTATTGATCGAAATAGTGAATCTGGCATTGAACTAGAGACTGTTACTGGACTTGTGGAACTGAAAAATGTGGACTTTTCTTACCCATCTAGGTCAGAAGTTCGGATCCTCAATGATTTCTCCTTGAATGTGCCCGCTGGCAAGACCATAGCTTTGGTGGGTAGCAGCGGCTCCGGTAAGAGCACTGTTGTCTCCCTCATTGAGAGATTCTATGACCCAACTTCAGGACAAGTTCTGCTAGATGGTCATGACATTAAGACTTTGAAGCTTAGATGGTTGAGGCAGCAGATAGGACTAGTGAGCCAAGAGCCTGCTTTGTTTGCTACCACAATACGAGAAAATATACTGTTGGGTAGGCCTGATGCAAACCAGATTGAGATTGAAGAAGCTGCCAGGGTTGCTAATGCACATTCCTTCATCATTAAACTTCCTGAAGGCTATGAAACCCAGGTTGGAGAGAGAGGGCTGCAACTTTCTGGAGGGCAAAAACAGAGAATAGCAATAGCAAGGGCAATGCTGAAAAACCCTGCAATTCTTCTCCTAGATGAGGCAACAAGTGCATTGGACTCAGAATCAGAAAAGCTGGTGCAAGAAGCCCTTGATCGGTTCATGATTGGCAGAACAACTCTAGTCATTGCCCATCGCCTATCCACCATTCGCAAAGCTGATCTTGTAGCTGTACTTCAGCAAGGAAGTGTTTCTGAAATTGGTACTCACGATGAGCTCTTCTCAAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCTCATGAAACTGCCATGAGTAATGCGAGAAAGAGCAGTGCAAGGCCTTCAAGTGCCAGAAATTCTGTCAGCTCACCAATAATTGCGAGGAATTCTTCTTATGGACGGTCACCATACTCGCGTAGGCTATCTGATTTCTCTACGTCCGATTTTAGCCTGTCCCTTGATGCATCACATCCAAATTACAGGCTTGAAAAGCTAGCTTTCAAAGAGCAAGCTAGTTCCTTCTGGAGACTTGCAAAAATGAACTCTCCAGAATGGCTTTATGCTTTAATTGGCTCTATAGGATCTGTTATTTGTGGATCTCTCAGTGCCTTCTTTGCTTATGTTCTTAGCGCTGTTCTCAGTGTGTATTACAATCCAGACCACAGATACATGATCCGTGAAATAGAAAAGTACTGTTACTTGTTGATTGGACTTTCATCAACTGCACTTCTCTTCAACACATTGCAACACTTCTTCTGGGACATTGTTGGAGAAAATCTTACCAAACGTGTGAGGGAGAAAATGCTTACAGCGGTGCTCAAAAACGAAATGGCGTGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATTGCTGCAAGGCTGGCTCTTGATGCCAATAATGTCAGATCAGCCATTGGAGATCGAATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCCTGTACTGCAGGGTTTGTGCTGCAATGGCGCCTTGCCCTTGTCCTTATAGCTGTCTTCCCCATTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGATTCTCTGGTGACCTGGAAGCTGCTCATGCCAAGGCTACACAACTTGCAGGCGAAGCTATAGCCAATGTAAGGACTGTTGCAGCCTTCAATTCAGAAACAAAAATTGTTGGTCTTTTCACCTCCAATCTCCAAGCTCCACTAAAGCGTTGCTTTTGGAAGGGCCAAATTTCTGGAAGTGGATATGGTATAGCTCAGTTTGCACTTTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTAGTGAAGCATGGCATCTCTGACTTCTCCAAAACAATCCGAGTTTTTATGGTCCTAATGGTTTCCGCAAATGGCGCTGCTGAAACTTTAACACTGGCTCCTGACTTTATCAAAGGAGGCCGAGCCATGAGGTCAGTCTTCGAACTCCTTGACCGAAGAACTGAAATTGAGCCTGATGATCAAGATGCCACTCCTGTTCCTGATCGTCTCCGTGGTGAAGTTGAACTTAAGCATGTAGATTTCTTTTATCCAACTCGTCCTGATATGCCAGTTTTTCGTGACCTCAGTCTTCGTGCAAGGGCTGGTAAAACTCTTGCCCTTGTAGGACCTAGTGGCTGTGGTAAGAGCTCAGTTATTGCACTTATACAGAGATTCTATGATCCAACATCTGGTCGGGTCATGATTGATGGCAAGGACATCAGGAAATACAATCTCAAGTCCTTAAGAAGGCATATTTCTGTGGTACCTCAGGAGCCATGCTTGTTTGCTACTACTATTTATGAAAACATTGCTTATGGGCATGAGTCAGCCACTGAAGCTGAGATAATTGAAGCTGCAACTCTTGCCAATGCACACAAGTTCATATCTGCTTTGCCAGATGGATACAAGACATTTGTTGGGGAGAGAGGTGTTCAGCTGTCCGGGGGACAAAAGCAAAGAATAGCAGTTGCTCGGGCTTTTGTGAGGAAGGCTGAACTTATGCTTCTTGATGAGGCCACAAGTGCACTTGATGTTGAATCTGAGAGGTCAGTTCAGGAGGCTCTAGATCGGGCCTCCTCGGGGAAAACAACTATCATTGTTGCACACAGGCTATCAACTATTAGGAATGCCAATCTGATTGCTGTGATTGATGATGGGAAAGTAGCTGAGCAAGGCTCCCATTCACAGTTGTTGAAAAATCAGCCGGATGGGATTTATGCACGCATGATTCAGTTACAAAGGTTCACACACAACCAAGTCATTGGAATGGCCTCAGGTTCAAGTTCTTCAACAAGACCAAAAGATGAGGAAAGAGAGGCTAGCTAG 3966 0.4586 MQGLELVPDAVTSQQQEDQVPREMDTSEQPNKDVGGAAAITGNGGSISGEKAESVPSVGFGELFRFADGLDYVLMGIGTVGAVVHGCSLPLFLRFFADLVNSFGSNADDADKMTREVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQSTKMRIKYLEAALNQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTTTLAKLSGKSQEALSQAGNIAEQTVAQIRVVLAFVGESRALQAYSSALRVAQKIGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPSIDRNSESGIELETVTGLVELKNVDFSYPSRSEVRILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDANQIEIEEAARVANAHSFIIKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVICGSLSAFFAYVLSAVLSVYYNPDHRYMIREIEKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPIVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSETKIVGLFTSNLQAPLKRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFFYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHESATEAEIIEAATLANAHKFISALPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDVESERSVQEALDRASSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNQPDGIYARMIQLQRFTHNQVIGMASGSSSSTRPKDEEREAS 1321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02876 1321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1045 1293 IPR027417 -
Spst1g02876 1321 CDD ABC_6TM_Pgp_ABCB1_D1_like 75 372 - -
Spst1g02876 1321 Pfam ABC transporter 1073 1221 IPR003439 GO:0005524
Spst1g02876 1321 FunFam ABC transporter B family member 1 389 639 - -
Spst1g02876 1321 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1056 1290 IPR003439 GO:0005524
Spst1g02876 1321 Gene3D ABC transporter type 1, transmembrane domain 62 652 IPR036640 GO:0005524|GO:0016020
Spst1g02876 1321 Pfam ABC transporter transmembrane region 76 349 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g02876 1321 Pfam ABC transporter transmembrane region 732 1001 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g02876 1321 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 77 364 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g02876 1321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 638 IPR027417 -
Spst1g02876 1321 SUPERFAMILY ABC transporter transmembrane region 63 383 IPR036640 GO:0005524|GO:0016020
Spst1g02876 1321 PANTHER ABC TRANSPORTER B FAMILY 48 780 IPR039421 -
Spst1g02876 1321 ProSitePatterns ABC transporters family signature. 538 552 IPR017871 GO:0005524|GO:0016887
Spst1g02876 1321 Gene3D ABC transporter type 1, transmembrane domain 710 1019 IPR036640 GO:0005524|GO:0016020
Spst1g02876 1321 CDD ABC_6TM_Pgp_ABCB1_D2_like 720 1036 - -
Spst1g02876 1321 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 399 635 IPR003439 GO:0005524
Spst1g02876 1321 CDD ABC_MTABC3_MDL1_MDL2 399 638 - -
Spst1g02876 1321 FunFam ABC transporter B family member 1 710 1019 - -
Spst1g02876 1321 Gene3D - 1043 1294 IPR027417 -
Spst1g02876 1321 Gene3D - 389 639 IPR027417 -
Spst1g02876 1321 SMART AAA_5 1081 1273 IPR003593 GO:0016887
Spst1g02876 1321 SMART AAA_5 426 612 IPR003593 GO:0016887
Spst1g02876 1321 ProSitePatterns ABC transporters family signature. 1193 1207 IPR017871 GO:0005524|GO:0016887
Spst1g02876 1321 Pfam ABC transporter 417 566 IPR003439 GO:0005524
Spst1g02876 1321 Gene3D ABC transporter type 1, transmembrane domain 1020 1297 IPR036640 GO:0005524|GO:0016020
Spst1g02876 1321 SUPERFAMILY ABC transporter transmembrane region 718 1038 IPR036640 GO:0005524|GO:0016020
Spst1g02876 1321 FunFam ABC transporter B family member 1 62 397 - -
Spst1g02876 1321 MobiDBLite consensus disorder prediction 1 46 - -
Spst1g02876 1321 FunFam ABC transporter B family member 1 1044 1294 - -
Spst1g02876 1321 FunFam ABC transporter B family member 19 1020 1042 - -
Spst1g02876 1321 CDD ABC_MTABC3_MDL1_MDL2 1054 1293 - -
Spst1g02876 1321 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 731 1018 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02876 Spst-Chr1 37345379 37351273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02876 50 1315 Calmodulin-binding Proteins AT2G36910 89.424 0.0 2318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02876 K05658 - gmx:100814667 2397.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02876 1 37345379 37351273 Spst1g02876 1 37345379 37351273 ECH