Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02875 ATGGGTAGAGCTCCTTGTTGTGACAAGGCAAATGTAAAGAAAGGGCCATGGTCACCAGAAGAAGATGCAAAACTAAAGGACTACATAGAGCAACATGGCACCGGAGGGAATTGGATTGCCCTCCCACAAAAAGTTGGTTTGAAAAGATGCGGCAAGAGCTGTAGATTAAGGTGGCTTAATTATCTTAGACCCAACATTAAGCATGGTCAATTTTCTGATGCAGAAGATACAATAATCTGCAGCCTCTTTGCTAGCATTGGAAGCAGGTGGTCCATAATAGCATCTCAGTTGCCAGGGAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTTAAAAAGAAAATGATGGCCATGAATCCTTCACCCCAGAGGAAGCCTCATCAAAGTACCCTTTTACCCATCCTTCAAAGCTCACCATTGTCATTCAGAGACGACAGCAACAAATCATACTGCCACCCCCACAGGTCTTTCACAGGCTCGGGCTCCTTATCCTACTCTTCAAGTCTTCTGAGTGGAAACAACTCTTCTGCTTCTGCTGATTCCTTCTTTCAAGCACAAGAGAGTTTCATGGACCCAACTCAGAAGTGCCAATTTAGAGATAGCAGTAGTAATAACATGTTTGTGTTTGGTGGTGAAGCCGCAGCCACTAGCTGCAGCTCTTCTGATGCGAGCTGCAACAACCAGATCAGTCAAGTCATGGAGGCAGAATTTGGTGATGCAAGTTTTGTGGAGCAGATAGGTGTTGCTGATAATCACCTCTACACTGGGGTGGAAGACACTATTCACAAATTGATGATGTTCTCCAGTGCTGGTGTTAGTGGGTGGTCAGACAAACAAAATGGATTGTGGGAACAAAATCCATTGGATTATGGTCTAGAGGAAATTAAAGAGCTAATTAGCACCAATAACAGTTTCAACAACTTTTTGTTTGATGAAAAGAAGACAGAAGAAAGGGTCAAGTACTACTGA 975 0.4338 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDTIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAMNPSPQRKPHQSTLLPILQSSPLSFRDDSNKSYCHPHRSFTGSGSLSYSSSLLSGNNSSASADSFFQAQESFMDPTQKCQFRDSSSNNMFVFGGEAAATSCSSSDASCNNQISQVMEAEFGDASFVEQIGVADNHLYTGVEDTIHKLMMFSSAGVSGWSDKQNGLWEQNPLDYGLEEIKELISTNNSFNNFLFDEKKTEERVKYY 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02875 324 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Spst1g02875 324 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Spst1g02875 324 Gene3D - 69 133 - -
Spst1g02875 324 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Spst1g02875 324 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Spst1g02875 324 CDD SANT 16 62 IPR001005 -
Spst1g02875 324 PANTHER OS09G0431300 PROTEIN 1 297 - -
Spst1g02875 324 SMART sant 67 115 IPR001005 -
Spst1g02875 324 SMART sant 13 64 IPR001005 -
Spst1g02875 324 FunFam Transcription factor RAX3 7 68 - -
Spst1g02875 324 Gene3D - 7 68 - -
Spst1g02875 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Spst1g02875 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Spst1g02875 324 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02875 Spst-Chr1 37327370 37328779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02875 1 130 MYB Transcription Factor Family AT5G65790 81.538 1.93e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g02875 Myb_DNA-binding 5.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02875 K09422 - gmx:778084 498.819