Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g02850 | ATGCAAATGCAAGATGAACTACAAATCATCAAGGGCAGGCGCACAAAGCGTCAAAGGTGTCCATCCCCGCTTAGGTTAACCATGTCAACATGTTCCTCCGCAGGAAGAAGCAGCACCGACAATTCCGCAAGTTTTGATCTCCCAACAACCTCAAATGAATTAAGGAACGAAGAGGATGAGGACTTGGCCAATTGTTTGATTCTCTTGGCTCAAGGCCATACCCATCCAAAACCCTCACACAACAAGGAATCAGGGCTATATGTTTATGAGTGCAAGACTTGTAACCGATGCTTCCCTTCGTTTCAAGCCCTTGGTGGCCACAGAGCCAGCCACAAGAAAATTTCCAAGGCAAATGCAGAAGAAAAGCAAGGAGTAGTTACTACTTTTGTGGATAATAATAGTAATAATAATCATGAAGATTATTGTGTTCCCACGAGCACCACCCTCACCTTACAATTGTCAACGGTTTTGTATAATAGCAGCAACAGCACTAGGAGTAGCACTATTAATGCTAAATCTAAGGTTCATGAGTGTTCCATATGTGGGGCAGAGTTCTCATCTGGGCAAGCCTTGGGGGGGCACATGAGAAGGCATAGAAATTTTCTGAGCGCACCTACGAGTGGGGCAATTGCATATGGTGGTGATGGAGGCCGTGAAATCCCAGAAACTAAGAAACACAGAGATGTTCTGAACTTGGACTTGAATCTTCCGGCACCTGAGGATGATCATCACATAGAATCCAAGTTGTTTCCTTTTCAGTCCAAAGAAAAAGTCATTATCTTCTCCCCAACTTCTTTGGTGGATTGCCATTACTAA | 816 | 0.4412 | MQMQDELQIIKGRRTKRQRCPSPLRLTMSTCSSAGRSSTDNSASFDLPTTSNELRNEEDEDLANCLILLAQGHTHPKPSHNKESGLYVYECKTCNRCFPSFQALGGHRASHKKISKANAEEKQGVVTTFVDNNSNNNHEDYCVPTSTTLTLQLSTVLYNSSNSTRSSTINAKSKVHECSICGAEFSSGQALGGHMRRHRNFLSAPTSGAIAYGGDGGREIPETKKHRDVLNLDLNLPAPEDDHHIESKLFPFQSKEKVIIFSPTSLVDCHY | 271 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g02850 | 271 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 48 | 248 | - | - | |
Spst1g02850 | 271 | SMART | c2h2final6 | 176 | 198 | IPR013087 | - | |
Spst1g02850 | 271 | SMART | c2h2final6 | 89 | 111 | IPR013087 | - | |
Spst1g02850 | 271 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 91 | 111 | IPR013087 | - | |
Spst1g02850 | 271 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 176 | 198 | IPR013087 | - | |
Spst1g02850 | 271 | Pfam | C2H2-type zinc finger | 175 | 199 | - | - | |
Spst1g02850 | 271 | Pfam | C2H2-type zinc finger | 88 | 113 | - | - | |
Spst1g02850 | 271 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 178 | 198 | IPR013087 | - | |
Spst1g02850 | 271 | MobiDBLite | consensus disorder prediction | 29 | 52 | - | - | |
Spst1g02850 | 271 | Gene3D | Classic Zinc Finger | 87 | 198 | - | - | |
Spst1g02850 | 271 | MobiDBLite | consensus disorder prediction | 29 | 51 | - | - | |
Spst1g02850 | 271 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 89 | 111 | IPR013087 | - | |
Spst1g02850 | 271 | SUPERFAMILY | beta-beta-alpha zinc fingers | 88 | 198 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g02850 | Spst-Chr1 | 37069961 | 37070776 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g02850 | 5 | 271 | C2H2 Transcription Factor Family | AT2G28200 | 39.597 | 5.51e-53 | 172 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Spst1g02850 | zf-C2H2_6 | 3.3e-11 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g02850 | - | - | var:108322426 | 430.254 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst1g02850 | 1 | 37069961 | 37070776 | Spst11g01279 | 11 | 37254791 | 37255720 | ECH | |
Spst1g02850 | 1 | 37069961 | 37070776 | Spst1g02850 | 1 | 37069961 | 37070776 | ECH | |
Spst7g01007 | 7 | 17847371 | 17848177 | Spst1g02850 | 1 | 37069961 | 37070776 | ECH | |
Spst5g00494 | 5 | 3914287 | 3915228 | Spst1g02850 | 1 | 37069961 | 37070776 | ECH | |
Spst1g02850 | 1 | 37069961 | 37070776 | Spst5g00494 | 5 | 3914287 | 3915228 | ECH | |
Spst1g02850 | 1 | 37069961 | 37070776 | Spst7g01007 | 7 | 17847371 | 17848177 | PCT |