Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02850 ATGCAAATGCAAGATGAACTACAAATCATCAAGGGCAGGCGCACAAAGCGTCAAAGGTGTCCATCCCCGCTTAGGTTAACCATGTCAACATGTTCCTCCGCAGGAAGAAGCAGCACCGACAATTCCGCAAGTTTTGATCTCCCAACAACCTCAAATGAATTAAGGAACGAAGAGGATGAGGACTTGGCCAATTGTTTGATTCTCTTGGCTCAAGGCCATACCCATCCAAAACCCTCACACAACAAGGAATCAGGGCTATATGTTTATGAGTGCAAGACTTGTAACCGATGCTTCCCTTCGTTTCAAGCCCTTGGTGGCCACAGAGCCAGCCACAAGAAAATTTCCAAGGCAAATGCAGAAGAAAAGCAAGGAGTAGTTACTACTTTTGTGGATAATAATAGTAATAATAATCATGAAGATTATTGTGTTCCCACGAGCACCACCCTCACCTTACAATTGTCAACGGTTTTGTATAATAGCAGCAACAGCACTAGGAGTAGCACTATTAATGCTAAATCTAAGGTTCATGAGTGTTCCATATGTGGGGCAGAGTTCTCATCTGGGCAAGCCTTGGGGGGGCACATGAGAAGGCATAGAAATTTTCTGAGCGCACCTACGAGTGGGGCAATTGCATATGGTGGTGATGGAGGCCGTGAAATCCCAGAAACTAAGAAACACAGAGATGTTCTGAACTTGGACTTGAATCTTCCGGCACCTGAGGATGATCATCACATAGAATCCAAGTTGTTTCCTTTTCAGTCCAAAGAAAAAGTCATTATCTTCTCCCCAACTTCTTTGGTGGATTGCCATTACTAA 816 0.4412 MQMQDELQIIKGRRTKRQRCPSPLRLTMSTCSSAGRSSTDNSASFDLPTTSNELRNEEDEDLANCLILLAQGHTHPKPSHNKESGLYVYECKTCNRCFPSFQALGGHRASHKKISKANAEEKQGVVTTFVDNNSNNNHEDYCVPTSTTLTLQLSTVLYNSSNSTRSSTINAKSKVHECSICGAEFSSGQALGGHMRRHRNFLSAPTSGAIAYGGDGGREIPETKKHRDVLNLDLNLPAPEDDHHIESKLFPFQSKEKVIIFSPTSLVDCHY 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02850 271 PANTHER ZINC FINGER PROTEIN ZAT5 48 248 - -
Spst1g02850 271 SMART c2h2final6 176 198 IPR013087 -
Spst1g02850 271 SMART c2h2final6 89 111 IPR013087 -
Spst1g02850 271 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Spst1g02850 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 198 IPR013087 -
Spst1g02850 271 Pfam C2H2-type zinc finger 175 199 - -
Spst1g02850 271 Pfam C2H2-type zinc finger 88 113 - -
Spst1g02850 271 ProSitePatterns Zinc finger C2H2 type domain signature. 178 198 IPR013087 -
Spst1g02850 271 MobiDBLite consensus disorder prediction 29 52 - -
Spst1g02850 271 Gene3D Classic Zinc Finger 87 198 - -
Spst1g02850 271 MobiDBLite consensus disorder prediction 29 51 - -
Spst1g02850 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Spst1g02850 271 SUPERFAMILY beta-beta-alpha zinc fingers 88 198 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02850 Spst-Chr1 37069961 37070776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02850 5 271 C2H2 Transcription Factor Family AT2G28200 39.597 5.51e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g02850 zf-C2H2_6 3.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02850 - - var:108322426 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02850 1 37069961 37070776 Spst11g01279 11 37254791 37255720 ECH
Spst1g02850 1 37069961 37070776 Spst1g02850 1 37069961 37070776 ECH
Spst7g01007 7 17847371 17848177 Spst1g02850 1 37069961 37070776 ECH
Spst5g00494 5 3914287 3915228 Spst1g02850 1 37069961 37070776 ECH
Spst1g02850 1 37069961 37070776 Spst5g00494 5 3914287 3915228 ECH
Spst1g02850 1 37069961 37070776 Spst7g01007 7 17847371 17848177 PCT