Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02846 ATGGCGTTCCCATTGGGAGCCCTCGCGACCACAACATGGCTCTTTCTTGTTGCATTCTCACTTCCTAATGTCCATGCAGCTCATAACCATGTTGGAAGTATCAAGAAAGTTAGCATCAAGAGGCATCGCCCGATTTTTAAACCAGGTCCATGGAAACAAGCTCATGCTACCTTCTATGAAGGAGGCTCTGGAACATTTGGTGGAGCTTGTGGGTACGAAGATGTGGTTAAAGAAGGTTATGGCCTAGACACGGTAGCATTGAGCTCTGTAATGTTCAACAATGGACTGACATGTGGGGCATGTTACGAGGTCAAATGTGTAAAATCGCCAGAGGGGGGGTGTAAGGCAGGGAAATCGTCTATTATTGTGACGGCAACCAACTTTTGCCCTCCAAATGATGATCTGCCAGGTGACAATGGAGGATGGTGCAATCCACCACGCGAACATCTTGATTTGGCCAAACCTGCGTATCTCAAAATTGCAGAGTATAAGGCTGGCATCGTCCCAATCCATTATCGCAGGGTACCGTGCAAGAAGAAAGGAGGAATTCGATTCACAATCACTGGGAATCCTTACTTCTATCTGGTATCAGTGTGGAATGTCGGAGGAGCTGGGGACATCACACAAGTGATGGTGAAGGGTGATAAGAAGGTCAAGAATTGGACAAAGTTGAAGCGAAATTGGGGTCAGAAATGGGAGACTGATAAGCAGTTAGTGGGAGAGACACTGGCATTCAGGGTGAGAGCCAGTGATAGCAGATATAAGCCGCTGAAAAAAGGAATCGTGTTGACAAGGTCATAA 801 0.4682 MAFPLGALATTTWLFLVAFSLPNVHAAHNHVGSIKKVSIKRHRPIFKPGPWKQAHATFYEGGSGTFGGACGYEDVVKEGYGLDTVALSSVMFNNGLTCGACYEVKCVKSPEGGCKAGKSSIIVTATNFCPPNDDLPGDNGGWCNPPREHLDLAKPAYLKIAEYKAGIVPIHYRRVPCKKKGGIRFTITGNPYFYLVSVWNVGGAGDITQVMVKGDKKVKNWTKLKRNWGQKWETDKQLVGETLAFRVRASDSRYKPLKKGIVLTRS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02846 266 PANTHER EXPANSIN-A15 26 253 IPR002963 GO:0009664
Spst1g02846 266 SUPERFAMILY Barwin-like endoglucanases 50 200 IPR036908 -
Spst1g02846 266 SUPERFAMILY PHL pollen allergen 179 255 IPR036749 -
Spst1g02846 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 182 IPR007112 -
Spst1g02846 266 SMART dpbb_1 84 172 IPR007112 -
Spst1g02846 266 Pfam Expansin C-terminal domain 183 253 IPR007117 -
Spst1g02846 266 PRINTS Expansin/Lol pI family signature 221 235 IPR007118 GO:0005576
Spst1g02846 266 PRINTS Expansin/Lol pI family signature 50 65 IPR007118 GO:0005576
Spst1g02846 266 PRINTS Expansin/Lol pI family signature 165 181 IPR007118 GO:0005576
Spst1g02846 266 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Spst1g02846 266 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Spst1g02846 266 PRINTS Expansin signature 121 131 IPR002963 GO:0009664
Spst1g02846 266 PRINTS Expansin signature 157 170 IPR002963 GO:0009664
Spst1g02846 266 PRINTS Expansin signature 140 157 IPR002963 GO:0009664
Spst1g02846 266 PRINTS Expansin signature 79 93 IPR002963 GO:0009664
Spst1g02846 266 PRINTS Expansin signature 181 193 IPR002963 GO:0009664
Spst1g02846 266 PRINTS Expansin signature 230 251 IPR002963 GO:0009664
Spst1g02846 266 Gene3D - 180 263 IPR036749 -
Spst1g02846 266 Gene3D - 34 178 IPR036908 -
Spst1g02846 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 192 266 IPR007117 -
Spst1g02846 266 CDD DPBB_EXPA_N 50 177 - -
Spst1g02846 266 Pfam Lytic transglycolase 84 172 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02846 Spst-Chr1 37028578 37031207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02846 45 253 Expansin Gene Family AT2G39700 59.242 1.66e-93 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02846 - - gmx:100800424 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02846 1 37028578 37031207 Spst1g02846 1 37028578 37031207 ECH