Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02829 ATGCTTTATAAAGCCGGCTCAAGCGATAACACACCCATTAGTCCTCAAGATAGTTTCAGTTTCCAGCTTGGTATATTTGGTAAGATTATAAAGCTTAGTGGAGCTCAAGACTTGGTGTCTCTGATAACAAGTATAGCCAGGAGGAGACATCATCATCATCATGACCAGGGGAGACATAAGGAAAAATGTGATGGGGCCAAGTGGGATTCCAGGCTTATTCAAGACTATAACGTGAGTCTTGTTTTCACGGTTGACTTAAAGGGCTGTGCTAACTTCAGTAGTGTGCAAAAAGCTGTTGATGCTGTTCCTGAATCTAGCTCAGATACCACCCTTATCATAATCGATTCTGGTGCATACAGGGAGAAGGTAGTTGTGCAAGCCAACAAAACAAACTTAATAATTCAAGGTCAAGGGTATCTGAATACGATCATAGAATGGAACGACACTGCGAATTCCACCGGCGGTACTTCCTATAGCTACTCCTTTGCCATCTTTGCTTCTAAGTTCACTGCTTATAACATCAGCTTTAAGAACACGGCTCCTCCACCGTCACCAGGAGCGGTTGGGGCACAAGCAGTGGCACTGAGAGTTACCGGTGATCAAGCAGCTTTTTATGGATGTGGATTTTATGGTGCGCAGGATACACTCAATGATGATGGTGGAAGACATTATTTTAAAGAATGCCTTATCCAAGGCTCCATTGATTTCATATTTGGAAATGCTAGATCACTTTATGAGGATTGTACCATAAACTGTGTGGCAGGAGAAGAGAAGGTTGAGATTAGCGGGTCGATCACCGCTCATGGGAGACAATCGAAGGATGAAGAAAGTGGGTTTTCCTTTGTGAATTGTAGCATTGTTGGGAGTGGAAGAGTGTGGCTTGGTAGAGCTTGGGGACCCTATGCCACTGTCATCTTCTCCACCACATACATGTCTGATATCATAGCAGCTGAAGGATGGAATGATTGGAGAGATCCCTCTAGAGACCAGAGTGTGTTCTTTGGAGAGTACCGTTGCCATGGACCTGGAGCAAATTATACATCCAGGGTCTCTTATGCGAAGCAACTCAGGGACTTAGAAGCAAACTCTTACATGGATATTTCCTACATTGATGGAAATGATTGGCTTCTTAATTATCCTCAACGCTATGTTAACCCTTCATAA 1164 0.4356 MLYKAGSSDNTPISPQDSFSFQLGIFGKIIKLSGAQDLVSLITSIARRRHHHHHDQGRHKEKCDGAKWDSRLIQDYNVSLVFTVDLKGCANFSSVQKAVDAVPESSSDTTLIIIDSGAYREKVVVQANKTNLIIQGQGYLNTIIEWNDTANSTGGTSYSYSFAIFASKFTAYNISFKNTAPPPSPGAVGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDGGRHYFKECLIQGSIDFIFGNARSLYEDCTINCVAGEEKVEISGSITAHGRQSKDEESGFSFVNCSIVGSGRVWLGRAWGPYATVIFSTTYMSDIIAAEGWNDWRDPSRDQSVFFGEYRCHGPGANYTSRVSYAKQLRDLEANSYMDISYIDGNDWLLNYPQRYVNPS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02829 387 SUPERFAMILY Pectin lyase-like 79 376 IPR011050 -
Spst1g02829 387 ProSitePatterns Pectinesterase signature 2. 230 239 IPR033131 -
Spst1g02829 387 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 74 376 - -
Spst1g02829 387 Pfam Pectinesterase 84 373 IPR000070 GO:0030599|GO:0042545
Spst1g02829 387 Gene3D - 76 384 IPR012334 -
Spst1g02829 387 FunFam Pectinesterase 76 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02829 Spst-Chr1 36816337 36819427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02829 75 376 Carbohydrate Esterase AT1G05310 55.082 1.27e-121 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02829 - - vun:114181275 679.863