Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02828 ATGGAGGAATATTGTGTTCGTGCTGTCTTTGTAATGGACGCAGGAGTGGGGCCTATATGCCGTCCTTGTGTGGAATCAAGGAAGTCCGAGGAAAATTCAAATATCGTAGTTGGCAAAAGAGTTAGGTCCCCTAGGCCAGTGTTGCTCTCCAACCCACTCAGTACTTCTGATCTGGATCAGCGATTGCATAAGTTAGTTTTTGAGGAAAACGGATTGCCTGATGGAACTGAAGTAGCTTATTATACACGTGGACAGGTTTCAAAATGGGCTCTGGAATTGTTTGTCGGTGCTGCAACACAGAGATCAGCCCCTCACAGTTTGAGGTCCATGCAGGATGGTCTTCTCGCAAGAAACCGTGAGTCCAAGTTACCTATTAGGCGAGAGTGTGCAGCTCTGTCTAGTATTCCGAGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTGGCACACAATGCCAATGCAGTGGCAGCTGGAAGGGTAGAAGGAGTTGATCCTATTAAACAGATTACTAATAGATGCATTCGCATAGTCAAAGACATTGAAACTGAGCTTAGTGGGTGTGCTTTATGCAGGGCTGTTGATTTCAGCAGATCTGGCTTTGGTCCACGTACAATAATACTTTGTGACCAGTGTGAAAAAGAATATCATGTTGGCTGTTTGCGGGATCACAAGATGGCATATTTAAAGGAATTGCCAGAAGGTAATTGGCTTTGTTGCAATGGTTGCACAAAAATACATTATACTTTGGATAACCTTTTGGTTAGGGGAGCTGAGAGACTCCCTGAATCTATCTTGGGTGTTATAAAGAAGAAGCAAGGGGAAAAGGGATTACAACCCATCAATGATATTGATGTAAGATGGAGGCTTCTTAATGGAAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTTTCAATCTTTCATCTGACCTCCCCTTACACCGTTATCTGCTATGCCCGTTCATGTTTAGACAAGGTTGGTTTTATCATGGCCACAGCAGTCAAAATTGCAATCTTCCTTTCAAAAAAGCTTGTTCTAGAGTGTGATTATTGGGGTTGCACCATCTTAGATGTAGTAGTGTCATCGGATGACCCACCCCACTATGCAACACAAGAAGCCATTTCGGGGAGTTGGGGAGGGTTAGGGGGATTAGTGGGCGTGACCTTATTCCAGCCATGGTTTATGGTTAAAGTATCATCCACATACAGGAGGAATGTGCGTGGTCAGGAGTTTGGAGAAATGTATTGTGCATTACTAATAGTCAATTCAACTGTGGTATCTGCGGGCATGCTTCGAATTTTTGGCACAGATATTGCTGAACTCCCTCTAGTTGCGACAAGCAACGGGAAGCATGGAAAGGGCTACTTTCAAACACTCTTCTCCTGCATCGAGAGGCTGCTAGCTTTCTTGAATGTGAAGAACCTTGTGCTGCCAGCTGCTGAAGAAGCAGAATCCATATGGACAGATAAATTTGGGTTTAGCAAGATGAAACCAGATCAGCTTACCTACTATAGAAAGAACTGTAATCAGATAGTAAGTTTCAAAGGGACAAGTATGCTGCATAAGATGGTGCCTCCGTGTCGGATTATCAATAATCAATCTTGA 1635 0.4355 MEEYCVRAVFVMDAGVGPICRPCVESRKSEENSNIVVGKRVRSPRPVLLSNPLSTSDLDQRLHKLVFEENGLPDGTEVAYYTRGQVSKWALELFVGAATQRSAPHSLRSMQDGLLARNRESKLPIRRECAALSSIPSGDWYCQFCQNMFQREKFVAHNANAVAAGRVEGVDPIKQITNRCIRIVKDIETELSGCALCRAVDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWLCCNGCTKIHYTLDNLLVRGAERLPESILGVIKKKQGEKGLQPINDIDVRWRLLNGKIASPETRPLLLEAVSIFHLTSPYTVICYARSCLDKVGFIMATAVKIAIFLSKKLVLECDYWGCTILDVVVSSDDPPHYATQEAISGSWGGLGGLVGVTLFQPWFMVKVSSTYRRNVRGQEFGEMYCALLIVNSTVVSAGMLRIFGTDIAELPLVATSNGKHGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKMKPDQLTYYRKNCNQIVSFKGTSMLHKMVPPCRIINNQS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02828 544 SMART PHD_3 193 250 IPR001965 -
Spst1g02828 544 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 418 513 IPR016181 -
Spst1g02828 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 252 IPR013083 -
Spst1g02828 544 SUPERFAMILY FYVE/PHD zinc finger 186 247 IPR011011 -
Spst1g02828 544 PANTHER AUTOIMMUNE REGULATOR 127 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02828 Spst-Chr1 36807208 36815298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02828 412 541 PHD Transcription Factor Family AT2G36720 57.692 2.51e-41 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02828 - - gmx:100802562 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02828 1 36807208 36815298 Spst7g00984 7 16880065 16887381 PCT