Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02825 ATGGATGAAACCTTTGTAATGAACTCCTATGTCACCCCTCTTATTATCTCCACTGTTGGCATAGTTTGCTCTACTGTAGCAATAGCAGTCTACCATTGCATCCTCTTGAGGTTTTTCATTAGACCTCAGAGAACACAACACAGAAACAACACAACAAACACAAGTTGGGACAAGAGTGAAGGGGTTCAAGAAGAAATCCTTGACAAAATCCCAGTTTTCTCAATCTCCGCCCAAACAAGTAGTGGTGACAATGGCATTCATTTGGACCAAAATGTTGAATGCTCCATTTGCCTAGGACAATGGGAAGATGGGGATATGGTGCGGTCGTTGCCTTCTTGTAATCATGTTTTCCATAAATCTTGCATTGATGCATGGTTCACGGACCATGCCAATTGCCCTGTTTGTCGCTCACCAATCTCTTGTGATTGTGAGTCTACTTTTGCTTTCCCCAATTTTGGATTTCGGGGAGCCTTGTCACTTGATTCATTTGGCCTTTTGATGGTTAAAGATTTAGAACTGAAGTGA 525 0.421 MDETFVMNSYVTPLIISTVGIVCSTVAIAVYHCILLRFFIRPQRTQHRNNTTNTSWDKSEGVQEEILDKIPVFSISAQTSSGDNGIHLDQNVECSICLGQWEDGDMVRSLPSCNHVFHKSCIDAWFTDHANCPVCRSPISCDCESTFAFPNFGFRGALSLDSFGLLMVKDLELK 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02825 174 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 140 IPR044675 -
Spst1g02825 174 SMART ring_2 94 135 IPR001841 -
Spst1g02825 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 141 IPR013083 -
Spst1g02825 174 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Spst1g02825 174 SUPERFAMILY RING/U-box 86 142 - -
Spst1g02825 174 Pfam Ring finger domain 93 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02825 Spst-Chr1 36781436 36782057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02825 2 136 C3H Transcription Factor Family AT1G20823 28.777 5.15e-19 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02825 - - vra:106756930 190.66