Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g02825 | ATGGATGAAACCTTTGTAATGAACTCCTATGTCACCCCTCTTATTATCTCCACTGTTGGCATAGTTTGCTCTACTGTAGCAATAGCAGTCTACCATTGCATCCTCTTGAGGTTTTTCATTAGACCTCAGAGAACACAACACAGAAACAACACAACAAACACAAGTTGGGACAAGAGTGAAGGGGTTCAAGAAGAAATCCTTGACAAAATCCCAGTTTTCTCAATCTCCGCCCAAACAAGTAGTGGTGACAATGGCATTCATTTGGACCAAAATGTTGAATGCTCCATTTGCCTAGGACAATGGGAAGATGGGGATATGGTGCGGTCGTTGCCTTCTTGTAATCATGTTTTCCATAAATCTTGCATTGATGCATGGTTCACGGACCATGCCAATTGCCCTGTTTGTCGCTCACCAATCTCTTGTGATTGTGAGTCTACTTTTGCTTTCCCCAATTTTGGATTTCGGGGAGCCTTGTCACTTGATTCATTTGGCCTTTTGATGGTTAAAGATTTAGAACTGAAGTGA | 525 | 0.421 | MDETFVMNSYVTPLIISTVGIVCSTVAIAVYHCILLRFFIRPQRTQHRNNTTNTSWDKSEGVQEEILDKIPVFSISAQTSSGDNGIHLDQNVECSICLGQWEDGDMVRSLPSCNHVFHKSCIDAWFTDHANCPVCRSPISCDCESTFAFPNFGFRGALSLDSFGLLMVKDLELK | 174 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g02825 | 174 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 5 | 140 | IPR044675 | - | |
Spst1g02825 | 174 | SMART | ring_2 | 94 | 135 | IPR001841 | - | |
Spst1g02825 | 174 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 141 | IPR013083 | - | |
Spst1g02825 | 174 | ProSiteProfiles | Zinc finger RING-type profile. | 94 | 136 | IPR001841 | - | |
Spst1g02825 | 174 | SUPERFAMILY | RING/U-box | 86 | 142 | - | - | |
Spst1g02825 | 174 | Pfam | Ring finger domain | 93 | 136 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g02825 | Spst-Chr1 | 36781436 | 36782057 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g02825 | 2 | 136 | C3H Transcription Factor Family | AT1G20823 | 28.777 | 5.15e-19 | 78.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g02825 | - | - | vra:106756930 | 190.66 |