Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g02818 | ATGGCGGTTCCTCCGTCGGTCGCCGCCGCTCCGGCGTCTCTCTACGTCGGCGACCTCCATCCCGACGTCACCGATAGCCACCTCGTCGACGCATTCTCCGAGTTCAAGAGCCTCACCTCTGTTCGCGTCTGCAAAGACTCCACCACCGGCAAATCCCTCTGTTACGGCTATGTCAACTTCGTTTCTCCTGACGACGCAAATCGTGCAATCGAGATTATGAATCATACGTTGCTGAATGGAAAAATGATAAGGGTGATGTGGTCGCGTCGCGATCCTGATGCGAGGAAGAGCACTATAGGGAACTTGTTTGTTAAGAACATACCTGAATCGATAGATAATGCTGGACTGCAAGATATATTCAAAAAATATGGGAATATTTTGTCCAGCAAAGTTGTCACGTCTGAAGATGGGAAGAGCAAAGGATACGGCTTTGTTCAATTTGAATCTGAGGAATCTTCACGTGTTGCTACCGAGAAGCTGAATGGCTTTACTGTTCGTGATAAGCAGTTATATGTCGGGAAGTTTGTCAAAAAAAGTGAGCGCATCTTGCCAGGCGCGGATGCTAGATATACAAACTTGTACATGAAGAATTTGGACTTGGATATTACAGAAGCAAAACTGAAGGAGAAATTTTCCTCTTTTGGTAAAATTATTAGCTTGGCTATTGCAAAAGACCTCAATGGGATGTCCAAGGGTTTTGGCTTTGTGAACTATGATAACCCAGATGATGCTAAAAGGGCAATGGAAGAAATGAATGGATCACAATTAGGTTCTAAGATTCTTTATGTAGCCAGAGCACAAAAGAAGGCTGAGCGCGAGCAGATCTTACACCACCAATTTGAGGAGAAACGGCAGGAACAAATCTTGAAATACAAGGGATCAAACGTTTATGTGAAAAACATTGATGACAATGTAAGTGACGAAGAACTGAGGGATCATTTTAGTGCATGTGGAACTATAACTTCTGCAAAAGTTATGCAAGATGACAAAGGGATAAGTAAAGGGTTTGGCTTTGTCTGCTTCTCCACTGCTGAGGAGGCCAATATAGCCGTGAACACTTTTCATGGATTCATGTTTCATGGTAAACCACTATATGTTGCTCTTGCTCAGAGGAAAGAAGATAGGAAAGCACAATTGCAGCTTCAGTACACGCATCAAATAGCAGGACTAGCTGGACCTTCGACTGCCATTATCCCTGGTGGATATCCTCCTTATTACTATGCAGCTACTGGTGTTATTTCACACGTGCCTCCTCGAGCTGGGGTGATGTATCAACATGTTGCATTGAGCCCGGGATGGGGGGCTAATGGCTTTCTACCCCCTGCTAGATCATTTCAACAGTCATCAGTTCCTGCAGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAGGTTGAATGGGCATTCAGCAGCACAGGGAAATACCAACTCTGGTACTCATGTCCAACAAGCCCAGCAGACTTCTCAGTCAATGATCTCTTCTAGAGAGTCAAGTACTCAGCAGAGAACCGGACAGCCTAAGTACATACCCAGTGGACGCCAGCGTGACATAGAAAAAGCATCTGGTTCCTCATCCGCTGATTCAAATTCTGGTAGAGGGTCCCATGGGCCAGAAATGCTGCATAGCTTGCTTGCTGGTGCTGATCCGGAGCAGCAGAAAGATATACTCGGAGAGCATCTTTACATGCTTGTTCAGAAACTAAAGCCTAGCTTAGCGGCAAAAATAACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGCTGGTTCTCCTGGAATCGCCAGAGTCTCTTTCTGCAAAGGTGGAAGAAGCTGTGCAAGTGCTTAAGAACTCGAAGACCAAAGTTTCTGGCCAGGACGTACTTCATTCAAATTACCTTTCAGCTGAAGTTGCAGTGAACTGA | 1908 | 0.4534 | MAVPPSVAAAPASLYVGDLHPDVTDSHLVDAFSEFKSLTSVRVCKDSTTGKSLCYGYVNFVSPDDANRAIEIMNHTLLNGKMIRVMWSRRDPDARKSTIGNLFVKNIPESIDNAGLQDIFKKYGNILSSKVVTSEDGKSKGYGFVQFESEESSRVATEKLNGFTVRDKQLYVGKFVKKSERILPGADARYTNLYMKNLDLDITEAKLKEKFSSFGKIISLAIAKDLNGMSKGFGFVNYDNPDDAKRAMEEMNGSQLGSKILYVARAQKKAEREQILHHQFEEKRQEQILKYKGSNVYVKNIDDNVSDEELRDHFSACGTITSAKVMQDDKGISKGFGFVCFSTAEEANIAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQLQYTHQIAGLAGPSTAIIPGGYPPYYYAATGVISHVPPRAGVMYQHVALSPGWGANGFLPPARSFQQSSVPAVSNNTRQHRQNRGRLNGHSAAQGNTNSGTHVQQAQQTSQSMISSRESSTQQRTGQPKYIPSGRQRDIEKASGSSSADSNSGRGSHGPEMLHSLLAGADPEQQKDILGEHLYMLVQKLKPSLAAKITGMLLEMDNGELLVLLESPESLSAKVEEAVQVLKNSKTKVSGQDVLHSNYLSAEVAVN | 635 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g02818 | 635 | MobiDBLite | consensus disorder prediction | 447 | 542 | - | - | |
Spst1g02818 | 635 | Coils | Coil | 263 | 283 | - | - | |
Spst1g02818 | 635 | FunFam | Polyadenylate-binding protein | 4 | 96 | - | - | |
Spst1g02818 | 635 | Gene3D | - | 181 | 274 | IPR012677 | - | |
Spst1g02818 | 635 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 14 | 83 | IPR000504 | GO:0003723 | |
Spst1g02818 | 635 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 102 | 170 | IPR000504 | GO:0003723 | |
Spst1g02818 | 635 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 296 | 364 | IPR000504 | GO:0003723 | |
Spst1g02818 | 635 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 193 | 260 | IPR000504 | GO:0003723 | |
Spst1g02818 | 635 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 12 | 90 | IPR000504 | GO:0003723 | |
Spst1g02818 | 635 | FunFam | Polyadenylate-binding protein | 536 | 622 | - | - | |
Spst1g02818 | 635 | CDD | RRM4_I_PABPs | 293 | 371 | - | - | |
Spst1g02818 | 635 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 100 | 177 | IPR000504 | GO:0003723 | |
Spst1g02818 | 635 | SUPERFAMILY | RNA-binding domain, RBD | 287 | 380 | IPR035979 | GO:0003676 | |
Spst1g02818 | 635 | PANTHER | RNA BINDING PROTEIN | 12 | 75 | - | - | |
Spst1g02818 | 635 | Pfam | Poly-adenylate binding protein, unique domain | 546 | 610 | IPR002004 | GO:0003723 | |
Spst1g02818 | 635 | Gene3D | - | 5 | 100 | IPR012677 | - | |
Spst1g02818 | 635 | MobiDBLite | consensus disorder prediction | 447 | 510 | - | - | |
Spst1g02818 | 635 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 294 | 371 | IPR000504 | GO:0003723 | |
Spst1g02818 | 635 | SUPERFAMILY | RNA-binding domain, RBD | 184 | 275 | IPR035979 | GO:0003676 | |
Spst1g02818 | 635 | SMART | poly_2 | 550 | 613 | IPR002004 | GO:0003723 | |
Spst1g02818 | 635 | FunFam | Polyadenylate-binding protein | 97 | 181 | - | - | |
Spst1g02818 | 635 | SMART | rrm1_1 | 295 | 367 | IPR000504 | GO:0003723 | |
Spst1g02818 | 635 | SMART | rrm1_1 | 192 | 264 | IPR000504 | GO:0003723 | |
Spst1g02818 | 635 | SMART | rrm1_1 | 13 | 86 | IPR000504 | GO:0003723 | |
Spst1g02818 | 635 | SMART | rrm1_1 | 101 | 173 | IPR000504 | GO:0003723 | |
Spst1g02818 | 635 | Gene3D | - | 101 | 180 | IPR012677 | - | |
Spst1g02818 | 635 | SUPERFAMILY | PABC (PABP) domain | 542 | 622 | IPR036053 | GO:0003723 | |
Spst1g02818 | 635 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 191 | 268 | IPR000504 | GO:0003723 | |
Spst1g02818 | 635 | Gene3D | - | 275 | 382 | IPR012677 | - | |
Spst1g02818 | 635 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 538 | 615 | IPR002004 | GO:0003723 | |
Spst1g02818 | 635 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 12 | 611 | IPR006515 | GO:0003723 | |
Spst1g02818 | 635 | SMART | rrm2_1 | 187 | 264 | IPR003954 | GO:0003676 | |
Spst1g02818 | 635 | SMART | rrm2_1 | 13 | 86 | IPR003954 | GO:0003676 | |
Spst1g02818 | 635 | SMART | rrm2_1 | 101 | 173 | IPR003954 | GO:0003676 | |
Spst1g02818 | 635 | SMART | rrm2_1 | 295 | 367 | IPR003954 | GO:0003676 | |
Spst1g02818 | 635 | Gene3D | - | 537 | 616 | - | - | |
Spst1g02818 | 635 | FunFam | Polyadenylate-binding protein | 277 | 385 | - | - | |
Spst1g02818 | 635 | FunFam | Polyadenylate-binding protein | 182 | 276 | - | - | |
Spst1g02818 | 635 | SUPERFAMILY | RNA-binding domain, RBD | 13 | 179 | IPR035979 | GO:0003676 | |
Spst1g02818 | 635 | MobiDBLite | consensus disorder prediction | 519 | 534 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g02818 | Spst-Chr1 | 36723491 | 36727626 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g02818 | 12 | 633 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 52.548 | 0.0 | 621 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g02818 | K13126 | - | gmx:100779547 | 1090.49 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst1g02818 | 1 | 36723491 | 36727626 | Spst1g02818 | 1 | 36723491 | 36727626 | ECH | |
Spst1g02818 | 1 | 36723491 | 36727626 | Spst7g00966 | 7 | 16369515 | 16385028 | PCT |