Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02797 ATGGATTGGCATCACACCACAAAACCATTTGTTCCTCAGCCAGAGACCTTAAGCTTCTTCTACAACTATAACAACAACCCATATCCAGGAGTGGAAGTGAAACAAGCGACGTTGATGGAGACAGGAGAAAGATCGATTCCAGGAATGGACAACGGGAGCAAAGAGAAGAAGAAGCGATTAACAAGTAACCAGATAGAGTTATTGGAAAGGAGCTTCCAGGAAGAAATAAAGTTAGACCCTGAAAGGAAGATGAAGCTTTCGAGGGAGCTAGGCCTCCAGCCTCGCCAAATCGCTGTCTGGTTCCAAAACAGACGTACAAGGTGGAAAACCAAGCAGCTTGAACACTTGTACGATGTTCTCAAACACCAATATGATGTCATCTCCAACGAAAAGCAGAAGCTTCAAGAAGAGGTTATGAAGTTGAAGGCAATGCTGAGTAAAGAGCAAGGTTTTGGGACGCAAACATTTGGCGGTTACCCAGAAATGTCTGGGGAAGAAACTGTAGAAAGCACGTCAGAGGGTCTAAGGGGTTCGAACAAGGCACGGGGAAAGAGTAACATTGAGCAGGTTGCAGATCAGGGTTTTTGTTCTTTCACTGTGGAGGATTATAACACTGTTTCACTGCCTCTCTGCCCCTGGCCTGTTGTGCCTTATTAG 657 0.4551 MDWHHTTKPFVPQPETLSFFYNYNNNPYPGVEVKQATLMETGERSIPGMDNGSKEKKKRLTSNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHLYDVLKHQYDVISNEKQKLQEEVMKLKAMLSKEQGFGTQTFGGYPEMSGEETVESTSEGLRGSNKARGKSNIEQVADQGFCSFTVEDYNTVSLPLCPWPVVPY 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02797 218 MobiDBLite consensus disorder prediction 165 183 - -
Spst1g02797 218 SUPERFAMILY Homeodomain-like 45 113 IPR009057 -
Spst1g02797 218 SMART HOX_1 53 115 IPR001356 GO:0003677
Spst1g02797 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 165 IPR045224 GO:0003700
Spst1g02797 218 CDD homeodomain 54 112 IPR001356 GO:0003677
Spst1g02797 218 Pfam Homeobox associated leucine zipper 111 145 IPR003106 GO:0006355|GO:0043565
Spst1g02797 218 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Spst1g02797 218 FunFam Putative homeobox-leucine zipper protein ATHB-51 53 116 - -
Spst1g02797 218 MobiDBLite consensus disorder prediction 156 183 - -
Spst1g02797 218 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Spst1g02797 218 Pfam Homeodomain 54 109 IPR001356 GO:0003677
Spst1g02797 218 Coils Coil 117 144 - -
Spst1g02797 218 Gene3D - 48 118 - -
Spst1g02797 218 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Spst1g02797 218 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02797 Spst-Chr1 36542107 36543715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02797 12 141 Homeobox Transcription Factor Family AT5G03790 53.793 1.83e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst1g02797 Homeodomain 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02797 - - vra:106757543 389.808