Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02789 ATGGTTGAAGTAATGGAAAGTATCAGAAACACCTCCAAAGCTATCGTGAAACAGGAGTTCTTCTACCTTGTAAAAAATAGGAACTGGAGTAATGGAAATGTTGAAGGGTCACAATTAGAAGAACTTTCAATGTTCATGTGGGAGAGATGTTATATAAAATACTATGTGCCTTCATCTAATCGTTTGGATCTTAGCACAGATAGCAAGAATGTTGTCCATGTTGGAACTCCTCACCCTTCCAAGCAGGCTGGTAAAGCAACTGCAAATACCAAGCAGCAGACTCCGAAGTCAGGGGGAGATTACAGCTGTAAGCCTTGCAGCAGGTCATTCAAGACAGAAGATGCGTTAAACTCTCATAATAAGGCCAAGCACAGTGCTAAGTAA 384 0.4115 MVEVMESIRNTSKAIVKQEFFYLVKNRNWSNGNVEGSQLEELSMFMWERCYIKYYVPSSNRLDLSTDSKNVVHVGTPHPSKQAGKATANTKQQTPKSGGDYSCKPCSRSFKTEDALNSHNKAKHSAK 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02789 127 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 127 IPR013087 -
Spst1g02789 127 Gene3D Classic Zinc Finger 80 127 - -
Spst1g02789 127 Pfam C2H2-type zinc finger 101 125 - -
Spst1g02789 127 MobiDBLite consensus disorder prediction 82 100 - -
Spst1g02789 127 MobiDBLite consensus disorder prediction 70 103 - -
Spst1g02789 127 ProSitePatterns Zinc finger C2H2 type domain signature. 103 124 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02789 66 126 C2H2 Transcription Factor Family AT5G03740 59.420 4.77e-17 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g02789 zf-C2H2_6 3.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02789 - - gmx:100812152 122.864