LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g02777	ATGAACCCAAAACAAGAAAGTGATCCTCAACTGATTCCAGAGGGACAAATTGGCTTCTCCACCACTCTCTTGCGTACTCACGAAGCATTCCTCTCGTGCTCTTTTCCACGTCACACTTCACCTTCTCTTCCAACACGGGACATTGCTCTTTCTGCCTATTTCCTTTCGTCTTCCGTTCAACCATTCTCAACCATGAAACCAACGTCTTCCACTGTTTCTTCATCTTCCAAGTTTCCTTCTTCAAGCGCTGAGTTTGAGAAGGTCATTAGTTTGCAGCAGCCACTTGAATGCTCGCAAGGGAACCCGGTTCCGGCATTCCTATCCAAGACTTTCGACCTCGTTGAAGATCCATCGTTGGATCCGATCATATCCTGGGCCTCCTCCGGTGTTAGTTTCGTGGTGTGGGATCCTACCCTGTTAGCAATACACGTCTTGCCCAGGAAATTCAAGCATAACAATTTCTCCAGTTTTGTTCGCCAGTTAAATACCTATGGATTCCGCAAGATTGACTCTGACAAGTGGGAGTTTTTTAATGAAGCTTTTCAGAGAGGAAAGAGACATCTTTTGAAGAACATCCAAAGGCGCAGACCTCCTCAGCCCCATCAGTTTGGTAGCTATATTGTGCCTTATTATTCTGATGCAGGTAAGGCTGGACTTGAATTTGAGATAGAAAGACTAAGGAAGGAAAGGAGTGTGTTAATGCAAGAGGTGGTTGAGTTGCAGCAACAGCAACGGACAACACTTCGCCGCGCTAGACAAATAAATCAGAGGCTCCAATCTGCAGAGGTGATACACAGACAAATGCTTTCTTTCTTGGCAAGGTTACTTGAAAGCCCAGCGTTTTTAACATGCCTTCAGCATGAGAAGGAACAAAGAGATATAGAATCTCCTAAAGTGAGAAGGAGGTTTGTCAAGCAGCACCAAGGCCAAACAGGAATATCAGATTTTTTGAAGGAAGGGCGCATTGTAAGATACCAACCTGATTGGAGAGATGTAACCATCGCAGCCAAAATACCAGAAATGTGTCCAGCTTCACTTGAAGAGGGTTCCGATTACCTTTCACGGGGTTTGGCAAATGAATTGATTGAAGGTGCTGAGCATCTGATATCAGATCCGGAGGTTATGCCAACTGCTGACACCATTGGGTTAAAGTCATCAAGCTTTGCACTTGAAGATACCCTTTTCAAAGGGAAAAATGTCATGAACTCAAATCAGAAAGATGTTCTTGCACAGGAATTTGTTTCCTTCCCAGAGGATTTGACCAAGGAGGCAGGACTTCCAGAATTTTCGCCTCTTGGTACAGAAAGCATCATCAAGCCAGAAGATGGATGGAACCCCACCTTCAATGTTAGTGGCGCTCCTTCAAGCTCTAGGAATGAACCGTGGGGAAATCCTAACCATGAAGGGCAAGAATTTGGAATCATAAGTGGTATGTCGGACATGTGGGATCTTAGCTCACTGTGA	1464	0.4495	MNPKQESDPQLIPEGQIGFSTTLLRTHEAFLSCSFPRHTSPSLPTRDIALSAYFLSSSVQPFSTMKPTSSTVSSSSKFPSSSAEFEKVISLQQPLECSQGNPVPAFLSKTFDLVEDPSLDPIISWASSGVSFVVWDPTLLAIHVLPRKFKHNNFSSFVRQLNTYGFRKIDSDKWEFFNEAFQRGKRHLLKNIQRRRPPQPHQFGSYIVPYYSDAGKAGLEFEIERLRKERSVLMQEVVELQQQQRTTLRRARQINQRLQSAEVIHRQMLSFLARLLESPAFLTCLQHEKEQRDIESPKVRRRFVKQHQGQTGISDFLKEGRIVRYQPDWRDVTIAAKIPEMCPASLEEGSDYLSRGLANELIEGAEHLISDPEVMPTADTIGLKSSSFALEDTLFKGKNVMNSNQKDVLAQEFVSFPEDLTKEAGLPEFSPLGTESIIKPEDGWNPTFNVSGAPSSSRNEPWGNPNHEGQEFGIISGMSDMWDLSSL	487

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g02777	487	MobiDBLite	consensus disorder prediction	440	469	-	-
	Spst1g02777	487	ProSitePatterns	HSF-type DNA-binding domain signature.	145	169	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Spst1g02777	487	SUPERFAMILY	"Winged helix" DNA-binding domain	101	195	IPR036390	-
	Spst1g02777	487	SMART	hsfneu3	102	195	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Spst1g02777	487	MobiDBLite	consensus disorder prediction	448	464	-	-
	Spst1g02777	487	FunFam	Heat stress transcription factor B-4	98	196	-	-
	Spst1g02777	487	Coils	Coil	216	243	-	-
	Spst1g02777	487	PRINTS	Heat shock factor (HSF) domain signature	144	156	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Spst1g02777	487	PRINTS	Heat shock factor (HSF) domain signature	157	169	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Spst1g02777	487	PRINTS	Heat shock factor (HSF) domain signature	106	129	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Spst1g02777	487	Pfam	HSF-type DNA-binding	106	195	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Spst1g02777	487	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	94	301	IPR027725	-
	Spst1g02777	487	Gene3D	-	98	196	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g02777	Spst-Chr1	36253857	36255948	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g02777	91	464	HSF	AT5G03720	42.632	4.54e-81	256

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Spst1g02777		HSF_DNA-bind	8.3e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g02777	K09419		-	gmx:100788429	578.941