Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02776 ATGGAGAGTACGCGCAGATCGTTGGATAGATCGAGGGAGTCGGGTCCCAAGAAGCCCCGATTGATTGACGAACTCAGCGCTCGACAGTTGCCTCAACGACAGCAAGGGTCCGGGGCAGTTGCTACGTTGGCGTCTACGAGATTTCGAGCAAATGACAGAGACTCCGAAAGCAGCGATTCGGGTCGCGGCGGCGGCGGGTACCAGCCACAGCCTCCGCTGCACCATGAGCTTGTGGCTCAGTATAAGGCCGCGCTTGCTGAGCTCACTTTCAATTCTAAGCCGATAATTACAAACCTGACAATTATTGCAGGAGAAAACCAGTCTGCTGCCAAGGCAATTGCTGGCGCTGTGTGTGCTAACATTCTAGAGGTTCCAAGTGATCAAAAACTGCCATCTCTTTATCTCTTGGACAGTATTGTTAAGAACATCGGGCGGGATTATATAAAATATTTTGCTGTCAGAATACATGAGGTATTCTGCAAAGCTTACAGACAGGTTGATCCTTCTGTCCATTCAAGTATGAAGCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGTCTTCAGATGATTGAGAAGGAACTTGGGTTTGCACCTGCAGTCAATGGTTCAGCTTCGGTATCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCTCCTCATAGCATCCATGTCAATCCCAAGTATTTAGAAAGGCAGCGTCTCCAGCAATCAATCATGTGTTCCTTGGATGTTGAAACAGAACTGGAAGACGAATTTGACGCTTTAGTTAAAAGAGTAGTTAATGACATGACTGGAGCTTTGTTAAACTCAAATGAGGATTCAGAGAGGCCAGATAGAGCTTTGGGTGCTTCTCGACCATGGCTGGATCCTAGGATGAACTTGCTTCATAATCAGCACACACAGAGAGATGCATTTAATGATTCTGTTCCTGAGAAGAGCATTGATGGATCATTTGGAGGCAGTCAATATGGTTCTGGTATTTCAAGTAATTTGGTCTCAGGGGTTGGAAGAACTGGAAGTAAAGTCATTGATTTAGGGCACGAGAAAACATGGTTCAAAACAGATGGTGGTGATGCAGAGACCATATCTGAGAAAAAAAATGGTTTCAGTCTCAAGCGTAGTTTTTCAAATCATGAAGCACCAAAGTCCATGAATTTAGAAGCACTTCGTCAGCCAAGACAAAGTATAACTAACCTACGGAAAAATGTGATGTCAGGTAACTGGAAAAATTCTGAAGAGGAGGAGTTCACGTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACACAATGTGTTGAGCACTGACTCATGGATGACAGATGATGAAAATTTGGAAGGTGAAGATCACCTCCAAATCACACCCCCTTTTGGGGCAAAGGTTGATAGAGAATTATCTTCTGTTAAGAAGAAACAAATGCCTGGTTTTGGGGGCCATCCACCTTCATCATGGCAATTGCAGAAGCACCAGTTGAATCTGAAGCCAAGCTACTCAGAAGGATTGGTATCCACTGGCTTACTGGCCAACGCAAGTTCTTTACCTGTCAAGAAGGTGAACCAATCTTTTATGTCAAATGCATCAGTAGGAATGGTGAAAATTGTAGAACAACAATTTGATTCTGAGGAAACCGAATCCCCTTCTGGGCAGTCACCTTTGCCACAACAGTCTTCATCACTGCCAGGAACAGTACACCACCCTCGTTCAATGCAAAATTTGGCTGAGCAAGAAATGCCCCAGAATATCAAAACATCTCAATTTTCGGGGGGTTCAATAAGTCAGCTCATTAGAGATCGTTCACCTACCCTTCATCCCATTCTTCAGGTTGGTAACATGCGAAGATCACAGGAAAAGGACCCGCAGGACCCGGTATCTTCTGCAACTGCTTATGTATCAAAGCTTCAGTCACGGCAGCTGCATTCTTCTCAGACTGAAGTTTCTGTTAAAACTAAGCTTCCCCAGTCTAAAGTTTGTTTAGCCAAAGAAGTTTCAGACCAGTCAACCAAAAATAATTTGTCAGCTGCAGCTGTCAAGAGTGAAATCATCTTCAAGAAATCAGTTACCAGTAATCTGGATCCAAGGAAGCATCCACCTAAGTCTGGGGTTCAGTCTGGTAGGTCTTCTCCTACCAAATTAACTTCTTCAGGGTCTGTAGTGGCATCGCCATCTTTATTAGATCCTCTGCATAAAGATTTATCTATACTGCCAAAAAAACCTCAAGGAAAGTCTGGACAACCACCACAAAGGCTTGCTACTCAACCACCCGCTTCCTCTAACGTGAATGGTGCCAAAAATAATAATGTAAATCCAATCGCAAACCTTTTAAGCTCATTGGTCGCAAAGGGTTTGATATCTGCAGAAACAGAACCACCAACTATGGTACCAAGCGAGGTGTTGAAGGGATCCAAAGATAAAACTGTAGTCATTAGCAACAGTAGCTCTTTGCCAGTTACATCAGTTTCTGGTTCTGCAGCTGTCCCAGTATCGTCTTCCAGAGATGAGATAGACGCTGCTACAAAATCCTCTGTTGCCTCACCTCAATCAACTAGCACGAAAATCAGAAATCTCATTGGCTTTGATTTTAGACCTAATGTAATTCGAGAATTCCATGAACCTGTAATTAGGGAATTATTCGATGATTTCCCTCATTATTGCGAAATTTGCGGTATTAGGTTTAAACAAGAAGAACAGTATAATAGACACTTGGAGTGGCATGCCACAAGAGAACATGATCTAATTAAAGCATCAAGAAGTTGGTATGCTAAGTCAGGTGATTGGATTACTGGCAAGGCAGAATTTTCAACTGAGTTTGAGTTTACTGATTCAGTTGATGTATACGACAAAGAAACAGACAGCAGTCAACTGGATGTGATGATTCTAGCAGATGAAAATCAGTGTTTGTGTGTATTGTGTGGAGAGCTATTTGAAGATGTGTACTGTCAGGAAAGGAACGAGTGGATGTTCAAAGGGGCCGTTTGCATGAACTACTCAGATATCAATAATGAGATGGAAAGTAGAAATGTGGGTCCCATCATTCATGCCAAATGCTTATCAGAGAACTCAATTGTTACCAATTTGGTAAGAAGCCTTGTCTGA 3105 0.4319 MESTRRSLDRSRESGPKKPRLIDELSARQLPQRQQGSGAVATLASTRFRANDRDSESSDSGRGGGGYQPQPPLHHELVAQYKAALAELTFNSKPIITNLTIIAGENQSAAKAIAGAVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRIHEVFCKAYRQVDPSVHSSMKHLFGTWKGVFPPQCLQMIEKELGFAPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSIMCSLDVETELEDEFDALVKRVVNDMTGALLNSNEDSERPDRALGASRPWLDPRMNLLHNQHTQRDAFNDSVPEKSIDGSFGGSQYGSGISSNLVSGVGRTGSKVIDLGHEKTWFKTDGGDAETISEKKNGFSLKRSFSNHEAPKSMNLEALRQPRQSITNLRKNVMSGNWKNSEEEEFTWDEMNSGLTDHGHNVLSTDSWMTDDENLEGEDHLQITPPFGAKVDRELSSVKKKQMPGFGGHPPSSWQLQKHQLNLKPSYSEGLVSTGLLANASSLPVKKVNQSFMSNASVGMVKIVEQQFDSEETESPSGQSPLPQQSSSLPGTVHHPRSMQNLAEQEMPQNIKTSQFSGGSISQLIRDRSPTLHPILQVGNMRRSQEKDPQDPVSSATAYVSKLQSRQLHSSQTEVSVKTKLPQSKVCLAKEVSDQSTKNNLSAAAVKSEIIFKKSVTSNLDPRKHPPKSGVQSGRSSPTKLTSSGSVVASPSLLDPLHKDLSILPKKPQGKSGQPPQRLATQPPASSNVNGAKNNNVNPIANLLSSLVAKGLISAETEPPTMVPSEVLKGSKDKTVVISNSSSLPVTSVSGSAAVPVSSSRDEIDAATKSSVASPQSTSTKIRNLIGFDFRPNVIREFHEPVIRELFDDFPHYCEICGIRFKQEEQYNRHLEWHATREHDLIKASRSWYAKSGDWITGKAEFSTEFEFTDSVDVYDKETDSSQLDVMILADENQCLCVLCGELFEDVYCQERNEWMFKGAVCMNYSDINNEMESRNVGPIIHAKCLSENSIVTNLVRSLV 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02776 1034 CDD CID_Pcf11 78 188 IPR047415 -
Spst1g02776 1034 MobiDBLite consensus disorder prediction 748 768 - -
Spst1g02776 1034 MobiDBLite consensus disorder prediction 704 724 - -
Spst1g02776 1034 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 51 1023 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Spst1g02776 1034 MobiDBLite consensus disorder prediction 1 24 - -
Spst1g02776 1034 SMART 558neu5 76 198 IPR006569 -
Spst1g02776 1034 MobiDBLite consensus disorder prediction 544 569 - -
Spst1g02776 1034 FunFam polyadenylation and cleavage factor homolog 4 70 198 - -
Spst1g02776 1034 Pfam CID domain 82 191 IPR006569 -
Spst1g02776 1034 ProSiteProfiles CID domain profile. 73 201 IPR006569 -
Spst1g02776 1034 MobiDBLite consensus disorder prediction 823 849 - -
Spst1g02776 1034 SUPERFAMILY ENTH/VHS domain 75 202 IPR008942 -
Spst1g02776 1034 Gene3D - 71 198 IPR008942 -
Spst1g02776 1034 MobiDBLite consensus disorder prediction 542 569 - -
Spst1g02776 1034 MobiDBLite consensus disorder prediction 28 44 - -
Spst1g02776 1034 ProSiteProfiles Zinc finger C2H2 type domain profile. 886 913 IPR013087 -
Spst1g02776 1034 ProSitePatterns Zinc finger C2H2 type domain signature. 888 908 IPR013087 -
Spst1g02776 1034 MobiDBLite consensus disorder prediction 611 631 - -
Spst1g02776 1034 MobiDBLite consensus disorder prediction 1 72 - -
Spst1g02776 1034 MobiDBLite consensus disorder prediction 691 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02776 Spst-Chr1 36246303 36251979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02776 47 235 C2H2 Transcription Factor Family AT4G04885 55.497 5.91e-55 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g02776 CID 5.3e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02776 K14400 - gmx:100788958 1492.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02776 1 36246303 36251979 Spst1g02776 1 36246303 36251979 ECH
Spst1g02776 1 36246303 36251979 Spst7g00930 7 15269056 15273175 PCT