Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02772 ATGAACGGGCCGAGGTCGAGCCATTTCCCCTCCATGCCGCCGCAGCCCAAGGCGGAGCTGTTCCCCGGCGGCCACCCCAACCTGGCCGCGACGCAGCACTTCGAGATGATGATGTTTGGTCGTCAAGTGGCGGACATAATGCCTCGGTGTCTTCATGACTTTGCCTCTACCGATTCCGCCACGAATAATAACAATACGAGCATCGCTGTTGCCACTCCCACTACCACCACTAGTGCCTCCACTCCTCCGCTTAGTTGCTTAGAGGGTGAGACCGTAGGATGCATCGGTGGAGACGCCTCCACTGGAAGATGGCCCAGACAAGAGACTCTCACTCTTCTTGAGATCAGATCTCGCCTCGACTCTAAATTCAAAGAGGCTAATCAAAAGGGTCCCCTATGGGATGAAGTTTCTAGGATCATGTCTGAAGAACATGGATATCAAAGAAGCGGGAAGAAGTGCAGGGAGAAGTTTGAGAACCTGTACAAGTATTACAAGAAGACAAAGGAGGGAAAAGCAGGAAGACAGGATGGGAAGCATTACAGGTTCTTTCGTCAGCTTGAAGCCTTATACGGTGAAAACAGTAACCAAGCATCGGTGCCAGAAACCAATTTTGGCAGTAGCAGCCTTCGTTTCCACGCAAGCATCCACAACCCTTCTCAAACAAATCAAGAAATGTTTCAGTCTCAGAAGCATTGTGATAGCCTAAGTCTCACCAACTCCACTGATTTAGACACGTCATCATCGGATGACAATGATCAGAATAGCACTGGGGGACTCAAGGACAACGACTCCATGGAGAAGAGGAGAAAGAGGGTGAGTGGAAGAAGCTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAGATGAGGAAGCTAGTGGAGAAGCAAGAGGAGTGGTTGGATAAACTCACGAAGACACTGGAACAGAAGGAAAAGGAGAGGGTGTTAAGAGAAGAAGAATGGAGGAGACAAGAAGCTGTAAGGTTGGAGAGGGAACACAAATTTTGGGCTAAAGAGAGAGCATGGATTGAAGCCAGGGATGCTGCTTTAATGGAGGCTTTGCAAAAATTAACAGGAAATGAGATTATAAAGAGTACTCAATCTCCCGAGGGTCTAATGGTAACTGGAATTCAAAACCACAGTGAAAACCTGAATGAAGATGGGAGTGAAATACTAAATAGTACAACTGCCAGGGGTGCTGAAAGCTGGCCTGAATCTGAGATTACAAGGCTTCAACAGTTGAGAACTGAGATGGATACAAGGTATATACAAAGTGGGTGTTCACAAGAGATTATGTGGGAGGAAATAGCAACCAAAATGGCTTGTTTTGGTTACGAAAGGAGTGCTTTGATGTTCAAAGAAAAATGGGAAAGCATCAACAACTACGCAAGGAATGCTAAGGATGGAAACAAGAAGCGCAAGGAAGAGTCTAGAGGTTGTTTCTACTTCGATAACAGTGACCAGTCTTCTCTGTATAACCAAGGAGGGGCCTATTGTGATATTAATGATCAAAGGCACGAGACTGGGAGGCTGCAAAATGATGGTACTTCACCTTCCAATTCAAACGTTGGAAATGCAGTTGCTGGTGACAACTGTTTTCCCTTCTTGATGAATGAGGGTGCAAACTTATGGGAGAACTATAGCTTAAAGGTTAATAAAGCAAGCCAAAACCAGTGA 1677 0.4609 MNGPRSSHFPSMPPQPKAELFPGGHPNLAATQHFEMMMFGRQVADIMPRCLHDFASTDSATNNNNTSIAVATPTTTTSASTPPLSCLEGETVGCIGGDASTGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNQASVPETNFGSSSLRFHASIHNPSQTNQEMFQSQKHCDSLSLTNSTDLDTSSSDDNDQNSTGGLKDNDSMEKRRKRVSGRSWKVKIKDFIDSQMRKLVEKQEEWLDKLTKTLEQKEKERVLREEEWRRQEAVRLEREHKFWAKERAWIEARDAALMEALQKLTGNEIIKSTQSPEGLMVTGIQNHSENLNEDGSEILNSTTARGAESWPESEITRLQQLRTEMDTRYIQSGCSQEIMWEEIATKMACFGYERSALMFKEKWESINNYARNAKDGNKKRKEESRGCFYFDNSDQSSLYNQGGAYCDINDQRHETGRLQNDGTSPSNSNVGNAVAGDNCFPFLMNEGANLWENYSLKVNKASQNQ 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02772 558 PANTHER FI21293P1 69 520 - -
Spst1g02772 558 Coils Coil 293 320 - -
Spst1g02772 558 ProSiteProfiles Myb-like domain profile. 96 161 IPR001005 -
Spst1g02772 558 FunFam trihelix transcription factor PTL-like 104 166 - -
Spst1g02772 558 FunFam Trihelix transcription factor GT-2 403 465 - -
Spst1g02772 558 MobiDBLite consensus disorder prediction 221 272 - -
Spst1g02772 558 MobiDBLite consensus disorder prediction 221 260 - -
Spst1g02772 558 MobiDBLite consensus disorder prediction 1 26 - -
Spst1g02772 558 CDD GT1 403 467 - -
Spst1g02772 558 SMART sant 100 163 IPR001005 -
Spst1g02772 558 SMART sant 399 462 IPR001005 -
Spst1g02772 558 Pfam Myb/SANT-like DNA-binding domain 402 487 IPR044822 -
Spst1g02772 558 Pfam Myb/SANT-like DNA-binding domain 103 189 IPR044822 -
Spst1g02772 558 CDD GT1 103 168 - -
Spst1g02772 558 Gene3D - 403 465 - -
Spst1g02772 558 Gene3D - 104 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02772 Spst-Chr1 36177169 36179699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02772 103 553 Trihelix Transcription Factor Family AT5G03680 51.572 3.94e-142 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst1g02772 Myb_DNA-bind_4 1.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02772 - - gmx:100813245 965.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02772 1 36177169 36179699 Spst1g02772 1 36177169 36179699 ECH
Spst1g02772 1 36177169 36179699 Spst7g01110 7 33239970 33249668 PCT