Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02769 ATGCGTTCCAGCAACGCTAACACTTGTGCTGCATCAAGCACCGGAGCCTCTAACGGTAACACAGGACGCCACCCTGTGTACCGTGGAGTGAGGCGTAGGAGTAGTGGAAAATGGGTTTCCGAAATCCGTGAGCCCAGAAAACCTAACAGGATTTGGTTAGGGACATTTGCCACCCCTGAAATGGCTGCTATTGCCTATGACGTGGCAGCGCTTGCTCTTAAGGGGAAGGATGCTGAACTCAACTTCCCTAACTCCGCCTCTTCTCTTCCAGTTCCCGCTTCATCCGCTGCTCGCGACATTCAGATTGCTGCGGCAAGCGCAGCAGCCGCTGTCGGAGCAGCAAATGATGCACTATGTGACGGAAACCGAGGAGGGAATGTTTCGGTTTCATTGGCACAAGAGTTTCCAGGTGGAAACTTGAACCATTTTGTGGATGATGACTTGATCTTTGATATGCCAAATATTCTGGTGAATATGGCTGAAGGAATGTTACTTAGCCCTCCTCGTTTTGACAATTTTGCTGCTACAGACTATGACTACATGGATGAAGATCCTAATCTCTGGGGTTTTCCTTACTAG 579 0.494 MRSSNANTCAASSTGASNGNTGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFATPEMAAIAYDVAALALKGKDAELNFPNSASSLPVPASSAARDIQIAAASAAAAVGAANDALCDGNRGGNVSVSLAQEFPGGNLNHFVDDDLIFDMPNILVNMAEGMLLSPPRFDNFAATDYDYMDEDPNLWGFPY 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02769 192 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Spst1g02769 192 MobiDBLite consensus disorder prediction 1 21 - -
Spst1g02769 192 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Spst1g02769 192 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677
Spst1g02769 192 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 188 IPR045277 GO:0003700
Spst1g02769 192 FunFam Ethylene-responsive transcription factor 2 25 84 - -
Spst1g02769 192 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Spst1g02769 192 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Spst1g02769 192 Gene3D AP2/ERF domain 26 84 IPR036955 GO:0003700|GO:0006355
Spst1g02769 192 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Spst1g02769 192 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Spst1g02769 192 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02769 Spst-Chr1 36155730 36156308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02769 15 191 AP2-EREBP Transcription Factor Family AT2G36450 64.835 4.35e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g02769 AP2 7.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02769 - - gmx:100813781 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02769 1 36155730 36156308 Spst1g02769 1 36155730 36156308 ECH
Spst1g02769 1 36155730 36156308 Spst7g00920 7 14737325 14738648 PCT