Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02763 ATGGACTTGCATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCAGCCACAAACACAATCATCTGCCTCTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAAAGTCAGCACCCTGTCAGATTCAACGTTTGCAGCTACTAACAGATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAACTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTAGCTGGTGCTGCTGTTCCTGCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCGTTCTCCTCACTATTTCCTCCATCATCCTCTCCAACATTACCAACCTGCTCTGTTGCAATCAGGGTATTGGGGTAGAGGAGCGATGGATCCGGAGCCAGGGAGGTGCCGGAGAACTGACGGCAAAAAGTGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAGAAGTACTGTGAGCGCCACATGCATCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAAGTAGTGCTAATTGTGGTGGTAGTGGTGGTGGTGGTGGTGTTGGATCTCTAGGACTAGGTGCTTCATCTTCCATTTCTTCACCGCCGCTAGCTACTGCTTCTCTCAAATCCCCTTTTGATCTTCTTCACCTTAGTGAACGCTCCTCTGGGACCAAGAATGAAGACAAGAGCCTGTTTGAAAACGAAGATCATGTGGGTGGGGATTGCAGATCAGGCGGCCATATGCTGAGACATTTCTTCGATGATTGGCCACGATCACTGCAAGACTCTGACAACGTTGAAAACAATGCTAGCGGGATGAATTCGGCCACATGCCTCTCTATTTCTATGCCCGGAAATGCTTCCTCGGATGTGTCATTGAAATTGTCCACGGGCTATGGAGAGGACCCGGGTCCAACAAATGCGAATGTGAACCTTGAGGCAGAGCACGTTCAATTGAATTGGGCCGGAGGATGGGCCTCTGGTAGTCAAGTGGCTTCAATGGGTGGGCCACTTGCTGAGGCACTCAGATCATCTACTACAACTTCATCTCCCACTAGTGTTTTGCATCACTTGCCTCGTGGTTCTGTATCTGAGACCAGCTTCATTAGCACCTGA 1158 0.4974 MDLHLKQWRNQHESEEQHSTKMPKLLPESHQPQTQSSASALPLFVPEPNSKVSTLSDSTFAATNRFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPAELLQPIKKSLLRSPHYFLHHPLQHYQPALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPSSANCGGSGGGGGVGSLGLGASSSISSPPLATASLKSPFDLLHLSERSSGTKNEDKSLFENEDHVGGDCRSGGHMLRHFFDDWPRSLQDSDNVENNASGMNSATCLSISMPGNASSDVSLKLSTGYGEDPGPTNANVNLEAEHVQLNWAGGWASGSQVASMGGPLAEALRSSTTTSSPTSVLHHLPRGSVSETSFIST 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02763 385 ProSiteProfiles WRC domain profile. 140 184 IPR014977 -
Spst1g02763 385 PANTHER GROWTH-REGULATING FACTOR 5 32 304 IPR031137 GO:0005634|GO:0006351|GO:0032502
Spst1g02763 385 Pfam QLQ 73 105 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst1g02763 385 SMART QLQ_2 71 107 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst1g02763 385 MobiDBLite consensus disorder prediction 1 38 - -
Spst1g02763 385 Pfam WRC 141 183 IPR014977 -
Spst1g02763 385 ProSiteProfiles QLQ domain profile. 72 107 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst1g02763 385 MobiDBLite consensus disorder prediction 170 197 - -
Spst1g02763 385 MobiDBLite consensus disorder prediction 1 23 - -
Spst1g02763 385 MobiDBLite consensus disorder prediction 24 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02763 Spst-Chr1 36071943 36074844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02763 1 372 GRF Transcription Factor Family AT3G52910 51.671 1.79e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Spst1g02763 WRC 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02763 - - gmx:100814842 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02763 1 36071943 36074844 Spst1g02763 1 36071943 36074844 ECH
Spst1g02763 1 36071943 36074844 Spst7g00913 7 14109871 14113174 PCT