Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02752 ATGTACGAGAGGGAATCCTCTTCCCGAGAAATTGAAAAAACTAACTTGGGTGGATCGGGAAAAGGATGGGTTTCTCTCGCAATTTGGAGACGGAGGCCCATGCTTATAGCAGGATTTCGTTTTAGGATGGAGGCCCATAATAGTTTTACCAGGAACATGGTGTTTGTGACCGAAGGAAATTGTTGGATCCATTTCAATACAGGGCCCATCATATACACAAACCCTAAACCCTATTTATGTAATTACAGAAGTCGTAACCTTTTTTCTTTCTCCAATCCAAATCGCGCGTTCAGCTGCTACATCCTCACATTCCGGCGCAAAATGAAGGTCATTGCCGCCTATTTGCTCGCCGTTTTGGGAGGCAACGCTGCCCCTTCCGCCGATGACTTGAGGGTCATCCTTGGATCCGTTGGAGCAGACGCCAATGATGACAATATCAGTAGCTTTTTGTCTGAAGTCAAGGGCAAAGACATCGCAGAGCTTATCGCCGCCGGCAGGGAAAAGTTGGCTTCAGTGCCTTCCGGTGGTGGGGCCGCCGTTGCCGTGACCGCCGCACCCGGCGGTGGCGCTTCTGCTCCAGCAGCCGCCGAATCCAAGAAGGAGGAAAAGGTGGAAGAGAAGGAGGAATCAGATGACGATATGGGTTTCAGTCTCTTTGATTAA 663 0.4992 MYERESSSREIEKTNLGGSGKGWVSLAIWRRRPMLIAGFRFRMEAHNSFTRNMVFVTEGNCWIHFNTGPIIYTNPKPYLCNYRSRNLFSFSNPNRAFSCYILTFRRKMKVIAAYLLAVLGGNAAPSADDLRVILGSVGADANDDNISSFLSEVKGKDIAELIAAGREKLASVPSGGGAAVAVTAAPGGGASAPAAAESKKEEKVEEKEESDDDMGFSLFD 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02752 220 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 108 220 IPR044076 GO:0002182|GO:0003735|GO:0022625
Spst1g02752 220 Pfam 60s Acidic ribosomal protein 125 219 - -
Spst1g02752 220 CDD Ribosomal_P2 108 220 IPR044076 GO:0002182|GO:0003735|GO:0022625
Spst1g02752 220 Gene3D - 107 166 IPR038716 -
Spst1g02752 220 Hamap 50S ribosomal protein L12 [rpl12]. 109 220 IPR027534 GO:0003735|GO:0005840|GO:0006414
Spst1g02752 220 MobiDBLite consensus disorder prediction 186 220 - -
Spst1g02752 220 FunFam 60S acidic ribosomal protein P2 105 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02752 Spst-Chr1 35970293 35971188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02752 108 220 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 69.027 7.81e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02752 K02943 - gmx:100787024 141.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02752 1 35970293 35971188 Spst1g02752 1 35970293 35971188 ECH