Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02722 ATGCCTGGGACAGGGCAGAGAGATGAAATGATAAAAAATCCAGAGTCACCAGAGGAAAACAGTGAGCCTGAGAAACCAGCAGATTCTGATGAGCAAGTAGACTTTGATGGGGAAAATGATCAAGAGGAGACAATGGAGGAAGAAGAAGTTGAGTATGAAGAAGTAGAAGAGGAGGAAGAAGTGGAAGAGGAAGACGAAGAGGAGGAGGAGGAAGAAGAAGAAGAGACTAAGCCCCGGGATGGTGAAGATGAGACAAGAGTGGTAGACACTAAGGATGAAGTTAAGAACAAAAAACAAGCTGAGCTTCTTGCGCTTCCACCCCATGGATCTGAGGTTTACATTGGGGGCATTCCTCAAAATGTTTCTGAAGAAGATTTGAAGGTATTTTGTCAATCTGTGGGAGAAGTTTGGGAGGTTAGGATAATGAAGGGAAAAGAATCCAGTGATTCAAAAGGTTATGCTTTCGTGACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATCGAGGAGCTGAACAATTCAGAATTCAAGGGAAAAAGAATAAAGTGCTCAACATCTCAAGCTAAACACAGGTTGTTCATTGGTAATGTTCCCAGAAAATGGACTGAAGAAAATATGAAGAAAATTGTTGCAGAGGTTGGCCCTGGAGTCATATCTGTGGAACTCTTGAAGGACCCACAATGTTCTGGCCGAAATCGGGGATTTGCTTTTATTGAGTATTACAATAATGCTTGTGCAGAATATTCTAAGCAGAAAATGTCAAACTCAAACTTTAAACTTGACAGTAATGCTCCAACAGTGAGTTGGGCTGATCCAAGGAATTATGAATCATCTGCAAACTCTCAGGTAAAAGCATTGTATGTAAAGAACCTTCCAGGAAACATTACTCAGGATCATCTTAAGGAGCTGTTTGAACGCCATGGAAAAATCACAAAAGTGGTTCTCCCTTCTGCTAAAGCCGGCCTCGAAAAGAGCAGATATGGTTTTGTGCACTTTGCTGAAAGGTCAAGTGCCATGAAGGCATTGGAGAACACAGAGAAATATGAAATTGATGGACAAATATTGGAGTGTTCACTTGCGAAACCACAAGCAGATCAGAAGTCATCTGGGGCAGCAAATCCACAAAAGTCAACTTCACTTCCCACTTTTCCATCTCATCTTGGTTATGGTATGGTTGGTGGTGCTTATGGTGCAGGATATGGTGCTGCTGGCTTTGCACAATCACTGTTGTATGGTCCTGGACCAACTTCTCCGGGCATGCCAATGATGCCAATGCTTTTACCAGATGGAAGGATTGGATATGTATTGCAAAGACCAGGGTTTCAACAGCCTACTCCAATTACAGGATCCCGACATATTCGGAGTGGTGACGCTAGTGGTGGGAAGCGCAGCAATGATAACCGCTATCGTGGGCATGACCGATATCATCCCTACTGA 1437 0.4315 MPGTGQRDEMIKNPESPEENSEPEKPADSDEQVDFDGENDQEETMEEEEVEYEEVEEEEEVEEEDEEEEEEEEEETKPRDGEDETRVVDTKDEVKNKKQAELLALPPHGSEVYIGGIPQNVSEEDLKVFCQSVGEVWEVRIMKGKESSDSKGYAFVTFKTKELASKAIEELNNSEFKGKRIKCSTSQAKHRLFIGNVPRKWTEENMKKIVAEVGPGVISVELLKDPQCSGRNRGFAFIEYYNNACAEYSKQKMSNSNFKLDSNAPTVSWADPRNYESSANSQVKALYVKNLPGNITQDHLKELFERHGKITKVVLPSAKAGLEKSRYGFVHFAERSSAMKALENTEKYEIDGQILECSLAKPQADQKSSGAANPQKSTSLPTFPSHLGYGMVGGAYGAGYGAAGFAQSLLYGPGPTSPGMPMMPMLLPDGRIGYVLQRPGFQQPTPITGSRHIRSGDASGGKRSNDNRYRGHDRYHPY 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02722 478 MobiDBLite consensus disorder prediction 441 478 - -
Spst1g02722 478 SMART rrm2_1 111 184 IPR003954 GO:0003676
Spst1g02722 478 SUPERFAMILY RNA-binding domain, RBD 107 273 IPR035979 GO:0003676
Spst1g02722 478 MobiDBLite consensus disorder prediction 79 99 - -
Spst1g02722 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 362 IPR000504 GO:0003723
Spst1g02722 478 MobiDBLite consensus disorder prediction 456 478 - -
Spst1g02722 478 MobiDBLite consensus disorder prediction 362 380 - -
Spst1g02722 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 353 IPR000504 GO:0003723
Spst1g02722 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 259 IPR000504 GO:0003723
Spst1g02722 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 182 IPR000504 GO:0003723
Spst1g02722 478 SMART rrm1_1 111 184 IPR000504 GO:0003723
Spst1g02722 478 SMART rrm1_1 191 268 IPR000504 GO:0003723
Spst1g02722 478 SMART rrm1_1 285 358 IPR000504 GO:0003723
Spst1g02722 478 Gene3D - 274 404 IPR012677 -
Spst1g02722 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Spst1g02722 478 MobiDBLite consensus disorder prediction 33 78 - -
Spst1g02722 478 Gene3D - 191 271 IPR012677 -
Spst1g02722 478 MobiDBLite consensus disorder prediction 361 380 - -
Spst1g02722 478 MobiDBLite consensus disorder prediction 1 100 - -
Spst1g02722 478 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 14 415 - -
Spst1g02722 478 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 191 271 - -
Spst1g02722 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 272 IPR000504 GO:0003723
Spst1g02722 478 MobiDBLite consensus disorder prediction 11 32 - -
Spst1g02722 478 Coils Coil 38 77 - -
Spst1g02722 478 CDD RRM_SF 112 184 - -
Spst1g02722 478 SUPERFAMILY RNA-binding domain, RBD 278 369 IPR035979 GO:0003676
Spst1g02722 478 Gene3D - 31 190 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02722 Spst-Chr1 35721491 35725958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02722 112 433 Eukaryotic Initiation Factors Gene Family AT4G34110 23.416 1.94e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02722 K13161 - gmx:100798476 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02722 1 35721491 35725958 Spst1g02722 1 35721491 35725958 ECH