Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02712 ATGGTCAAGAGATCAAAGATGGAGATTATGCCACCAGGTTATCGTTTCTACCCCACAGAAGAGGAGCTGATTTCGTTCTATCTTCACAATAAACTCGAAGGTGAAAGAGAGGACATGAATCGCCTCATCCCAATCGTTGATATATACGACTACAACCCCTCTCAACTCCCACAAATTTCAGGAGAGGCGAGTCTGAGAGACACAGAACAATGGTTCTTTTTCATTCCGAGGCAAGAGAGTGAAGCTCGAGGAGGAAGACCAAAGCGTCTCACAACCACAGGGTACTGGAAAGCTACGGGGTCTCCAAATCATGTTTTTTCTTCGGATGATCGCATCATAGGCATTAAAAGGACTATGGTTTTCTACAGTGGAAGAGCTCCAAACGGAGCCAAAACCGATTGGAAGATGAATGAGTATACGGCCATCAAAGGTGAATCTTCCTCTTCCACTAAGGCAGTTCCCATGTTAAGGAAGGAATTCAGTCTATGCAGAGTGTACAAAAAATCCAAGTGTTTGCGTGCATTTGATAGAAGACCAGCACCAAGGAGGGACACAGTGAGGTATTCAAGTGCTCAAAATGGTGAAGAGCAACAAAGGGGTTCAGCTTCAAGATCTTATGATTATCATCATCATCATCATCAAATTGTGGGGAGAAGTGCAACAAGTTCACCAGAGAGTTCTTCCTCCGGAGACCTTGACCATGACCAACCCCCCCTGCACGGTGAGGAAGCAACCCAAATGGATGGCGGCAACGACCCTTTTTTGGATTGGGAGAACGTGGATTTGTTCTTGGGATCTGAACCATGA 807 0.456 MVKRSKMEIMPPGYRFYPTEEELISFYLHNKLEGEREDMNRLIPIVDIYDYNPSQLPQISGEASLRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVFSSDDRIIGIKRTMVFYSGRAPNGAKTDWKMNEYTAIKGESSSSTKAVPMLRKEFSLCRVYKKSKCLRAFDRRPAPRRDTVRYSSAQNGEEQQRGSASRSYDYHHHHHQIVGRSATSSPESSSSGDLDHDQPPLHGEEATQMDGGNDPFLDWENVDLFLGSEP 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02712 268 MobiDBLite consensus disorder prediction 177 268 - -
Spst1g02712 268 Pfam No apical meristem (NAM) protein 11 140 IPR003441 GO:0003677|GO:0006355
Spst1g02712 268 MobiDBLite consensus disorder prediction 186 201 - -
Spst1g02712 268 Gene3D NAC domain 19 172 IPR036093 GO:0003677|GO:0006355
Spst1g02712 268 MobiDBLite consensus disorder prediction 217 233 - -
Spst1g02712 268 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 220 - -
Spst1g02712 268 SUPERFAMILY NAC domain 8 168 IPR036093 GO:0003677|GO:0006355
Spst1g02712 268 ProSiteProfiles NAC domain profile. 10 168 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02712 Spst-Chr1 35617239 35618848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02712 13 261 NAC Transcription Factor Family AT3G44350 46.063 1.10e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst1g02712 NAM 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02712 - - gmx:100777948 427.943