Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02708 ATGTGGGCAAGTGCAGAAGGTGGTGCTCCAGAGGTTACTCTGGAAACTTCTATGGGATCCTTCACCGTGGAGCTGTACTACAAGCATGCGCCCAGAACTTGTAGGAACTTCATTGAACTGTCTCGCAGAGGTTACTACGACAACGTTAAGTTCCACAGGATCATTAAGGACTTCATAGTACAAGGTGGGGATCCCACTGGAACTGGAAGGGGAGGAGAATCCATATACGGTGCAAAGTTTGAAGATGAGATTAAACGAGAGTTGAAACACACTGGAGCTGGTATCTTATCCATGGCAAATGCTGGCCCAAATACCAATGGTAGTCAGTTCTTTATTACTCTGGCACCATGCCCCTCTCTCGATGGAAAACATACAATATTCGGAAGAGTTAGTAGAGGGATGGAAATTATCAAACGACTTGGCAGCGTCCAAACAGACAACAACGATAGCTCCCGCACCCCTTTGCAAGTTAACTCAGTGCGATGCAGTGATTGCTTTCAGCTTCTTCCAACAGCAGCTATACATCATGAATCTAAAGGTACAACTGTTGTAATGAAGCTCTCCATCCTCGAATCACTACAAAGGATTCTCAGATGA 597 0.4539 MWASAEGGAPEVTLETSMGSFTVELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGAKFEDEIKRELKHTGAGILSMANAGPNTNGSQFFITLAPCPSLDGKHTIFGRVSRGMEIIKRLGSVQTDNNDSSRTPLQVNSVRCSDCFQLLPTAAIHHESKGTTVVMKLSILESLQRILR 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02708 198 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 15 164 IPR002130 GO:0000413|GO:0003755
Spst1g02708 198 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 121 IPR002130 GO:0000413|GO:0003755
Spst1g02708 198 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413|GO:0003755
Spst1g02708 198 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413|GO:0003755
Spst1g02708 198 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 IPR002130 GO:0000413|GO:0003755
Spst1g02708 198 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413|GO:0003755
Spst1g02708 198 SUPERFAMILY Cyclophilin-like 11 162 IPR029000 -
Spst1g02708 198 FunFam Peptidyl-prolyl cis-trans isomerase 2 164 - -
Spst1g02708 198 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 46 63 IPR020892 GO:0003755|GO:0006457
Spst1g02708 198 Gene3D - 2 168 IPR029000 -
Spst1g02708 198 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 9 160 IPR044666 -
Spst1g02708 198 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 160 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02708 Spst-Chr1 35546257 35549700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02708 12 149 U-box Gene Family AT5G67530 50.000 2.74e-44 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02708 K12733 - gmx:100786302 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02708 1 35546257 35549700 Spst1g02708 1 35546257 35549700 ECH