Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02705 ATGGCGGCCGTGAGAAAAATAATCGAGGCCAATAAAAATAAAACCTTGTTGCCATCTCTTCTCGCTTTTCGCCGAGGAATTGCTTACAAGCTTTTCGTTGGAGGACTGTCCTTCTACACTACAGAGAAAGCATTATCAGATGCATTTTCCAATTACGGGCAAGTTGTTGAAGCTAAAATTGTATCAGATAGGGTGTCAGACAGATCTAAGGGATTTGGGTTTGTCACCTTTGCTTCAGCAGACGAGGCTGAGAATGCCATAGCAGAAATGACAGGAAAGACATTAAATGGACGTGTTATCTTTGTTGATTATGCAAAACCCAATATCAACACTGGTGGTGGAATGCCAATTGCTAGAGGACCTCCTGAACCAACACCAGAAACTTGA 387 0.4238 MAAVRKIIEANKNKTLLPSLLAFRRGIAYKLFVGGLSFYTTEKALSDAFSNYGQVVEAKIVSDRVSDRSKGFGFVTFASADEAENAIAEMTGKTLNGRVIFVDYAKPNINTGGGMPIARGPPEPTPET 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02705 128 SUPERFAMILY RNA-binding domain, RBD 29 120 IPR035979 GO:0003676
Spst1g02705 128 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Spst1g02705 128 SMART rrm1_1 30 103 IPR000504 GO:0003723
Spst1g02705 128 Gene3D - 9 111 IPR012677 -
Spst1g02705 128 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 26 115 - -
Spst1g02705 128 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02705 Spst-Chr1 35524644 35525943 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02705 31 106 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 3.07e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02705 - - pvu:PHAVU_001G192800g 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02705 1 35524644 35525943 Spst1g02705 1 35524644 35525943 ECH