Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02701 ATGTCGATAAACCACTTCTCACCAGAAGCGAGACTATACTGGAGCGAGCAACAACCGGCCGCCACGTGGCTCGGCAACTCTCATACTCCTCGTTTCAACCTGAACGACAACCAGGAGGAGGTGGAGGAGGAGGAAGAGGAGGTGGTGGCGGCGGAGAAGGGTGGTGGTGGCGCGACGGAAGAGGAGGAGAAGGAAGCGATGTTCGAGAAGCCGTTGACTCCGAGCGACGTGGGGAAGCTGAACCGGTTGGTGATCCCGAAACAGCACGCGGAGAAGCACTTCCCGCTGGAGTCTTCGTCGTCGTCGTCGTCGTGCGGTGACAGCGCGAAGGGTGTGTTGCTGAGTTTCGAGGACGAGTCCGGGAAGTGCTGGCGCTTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGATGGAGTCGTTACGTGAAGGACAAACGGCTTCACGCTGGCGACGTGGTTTTCTTCCACAGACACCGGACCCATCCTCAACGCTTCTTCATCAGCTCCACCCGCCGCCAACCGAACCCCCCCGCTCACGTTACCAGGAGCGCCACACCCTCCTTCTACTCTGCGCACCCTTATCCTGCGCATCACCTCCCTTTCCCATACCAACCTGACTGTCTTCATGCACCACCAGGTGGAGGGTCCCAAGGACAGAACGAAACGACACCGGGAGGGAACAGTTCAAGTGGCAGGGTGCTGAGGCTGTTTGGGGTGAACATGGAATGCCAACCTGATAATGATTCCCAAAACTCCACGCCACAATGCTCTTACACTCTCTCCTCCTCTTCACTTGCCCACCACCACTTACACCGTCAAACCTCTTATTCTTCTTCCAACACTCACCATCACATGCTACGTCAACAACCATAA 888 0.5619 MSINHFSPEARLYWSEQQPAATWLGNSHTPRFNLNDNQEEVEEEEEEVVAAEKGGGGATEEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKHFPLESSSSSSSCGDSAKGVLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVFFHRHRTHPQRFFISSTRRQPNPPAHVTRSATPSFYSAHPYPAHHLPFPYQPDCLHAPPGGGSQGQNETTPGGNSSSGRVLRLFGVNMECQPDNDSQNSTPQCSYTLSSSSLAHHHLHRQTSYSSSNTHHHMLRQQP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02701 295 SUPERFAMILY DNA-binding pseudobarrel domain 65 175 IPR015300 -
Spst1g02701 295 Gene3D - 56 184 IPR015300 -
Spst1g02701 295 CDD B3_DNA 67 165 IPR003340 GO:0003677
Spst1g02701 295 MobiDBLite consensus disorder prediction 272 295 - -
Spst1g02701 295 MobiDBLite consensus disorder prediction 210 237 - -
Spst1g02701 295 ProSiteProfiles B3 DNA-binding domain profile. 68 178 IPR003340 GO:0003677
Spst1g02701 295 SMART B3_2 68 176 IPR003340 GO:0003677
Spst1g02701 295 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 31 258 IPR044800 GO:0003700
Spst1g02701 295 Pfam B3 DNA binding domain 68 172 IPR003340 GO:0003677
Spst1g02701 295 MobiDBLite consensus disorder prediction 56 70 - -
Spst1g02701 295 MobiDBLite consensus disorder prediction 24 70 - -
Spst1g02701 295 Coils Coil 34 54 - -
Spst1g02701 295 MobiDBLite consensus disorder prediction 220 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02701 Spst-Chr1 35503150 35504365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02701 61 267 RAV Transcription Factor Family AT5G06250 48.636 1.61e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst1g02701 B3 7.2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02701 K09287 - gmx:100802734 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02701 1 35503150 35504365 Spst1g02701 1 35503150 35504365 ECH
Spst1g02701 1 35503150 35504365 Spst7g00601 7 5549023 5550586 PCT