Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02667 ATGCTCCACTCTTCACTAACACTCCTCTTCACCCTCCTCTTTTCCCTCGCCACCGCCGACCCGAACGACGTCAAAATCCTGCGTCAATTTCGGAACGGGTTGGACAACCCGGACCTGTTGCCTTGGCCGGACAGCGGCGATGATCCATGTGGATGGAAGTACATTTTCTGCGACAGTAACAACCGCGTGAACCAGATTCAGGCGAAGGGGTTAAACCTGAGCGGTCCTCTGCCGCGGAACCTGAACCAGCTCACGAATCTCTTCAACGTGGGCCTCCAGAACAATAGGCTGAACGGCCCATTACCCTCCTTCAGCGGCCTGTCAAATCTGAAATACTTGTACCTTGACAACAATAACTTCGACTCCATCCCCTCAGATTTCTTTGACGGGCTTCAGAGCTTGGAAGTACTCGCGTTGGACAACAATAACCTCAACGCTAGCTCCGGCGGGTGGCACTTACCGCAAACTCTCCAGGGGTCAACGCAGTTGACCAATTTCTCCTGTATGGGCTGCAACCTCGCCGGCCCATTACCTGAGTTTCTCGGAACGATGAACTCGCTGTCGTTTTTGAAGCTCTCCAACAACAACTTAACGGGTGAGGTTCCGCTGAGTCTAAACGGCTCGGCGTCGTTGCAGGTTCTGTGGCTGAATAACCAGCAGGGGGAGCGTCTTACTGGAAGAATTGACGTTGTGGCTTCGATGGTTTCGCTCACCAGTTTGTGGCTTCATGGGAACTTGTTCACTGGAACGATTCCCGACAACATTGGGGATTTGAGCTCTCTGCGGGATCTTAACCTTAATGTGAACAACCTCGTCGGGTTGGTTCCTCAAGGTTTGGGTGACTTGAAGCTGGACAAGCTGGACTTGAATAACAACCATTTTATGGGTCCGATTCCGAATTTTAAAGCGGCTCATGTGTCGTATGATTATAACGATTTTTGTGTGAACAAATCAGGGGTTCCTTGCGCGTTTGAGGTGACGGCGCTGTTGGAGTTTCTTGGGGGATTGAATTATCCTGAGAATTTGGTTGATTCGTGGAGTGGGAATGATCCTTGTGGGGGGCATTGGTTGGGGATAAAGTGTAATGATGATGGAAAGGTGAATATGATTAATTTACCTAATTTGAATGTTAGTGGGAGTTTAAGTCCTTCTGTTGCAAATTTGGGTTCTCTTGTTGAGATTAGGTTAGGGGGGAATGATATTAGTGGTGCGGTGCCCGGTAATTGGAGTAGTTTGACATCTTTGAAATTGTTAGATCTGAGTGGGAATAACATTTCTCCTCCACTGCCTGTGTTTAAGACTGGATTGAAACCTATTGTTACTGGGAATCCTCTGTTCAACGGCGGTGCTGAAAATCCTTCATCAGGGAGCAAGAACCCATCATCTGGATCAGGGAATGTTGACCCTTCATCGGGTCAGTCCAATTCTAGTTCGAGTGATTCTCGTGAACCTAAGAAATTCAAAAGGAAAGAATTGGTTTCCATTGTTGCTCCGATTGCGGGTGTGGCAGCTGCGGCTTTTCTGCTCATTCCACTCTATGCATATTGTTTCAAGAGGAGGAAGGGCGGTTTCCAAGCTCCAGCTTCACTGGTAATTCACCCTAGAGATCCATCGGATTCGGACAGTGCTGTGAAGATTGCTGTTGCTAATAATACATATGGAAGCATTTCCACTTTGACAGGGAGTGGTTCTGGGAGTAGGAATAGCAGTGGAATTGGGGAGTCTCATGTCATTGAAGCTGGAAATCTTAGAATATCGGTTCAAGTTCTCAGGAATGTGACCAAGAATTTTGCGCCCGAGAATGAGCTTGGCCGTGGTGGATTTGGAGTTGTTTATAAGGGAGAGTTGGATGATGGAACTAAAATTGCAGTGAAACGAATGGAAGCTGGTGTGATTAGTAGCAAGGCATTGGATGAATTTCAAGCCGAGATTGCAGTTCTATCGAAAGTCCGGCACCGGCATCTGGTGTCTCTATTGGGTTTTTCTATTGAAGGTAATGAAAGGATTCTAGTGTATGAGTATATGCCACAAGGGGCCCTAAGTAAGCATCTTTTCCATTGGAAAAGCCTTGAACTGGAGCCACTCTCTTGGAAGAGGAGGCTCAATATTGCATTGGATGTTGCCCGAGGGATGGAGTATCTTCATACTCTGGCTCACCAGAGCTTCATTCACAGAGATCTTAAGCCGTCAAATATCTTGCTTGCTGATGATTTCAGAGCAAAGGTCTCAGATTTTGGATTGGTAAAACTTGCTCCTGAAGGCGAAAAATCTGTAGTGACCAGGCTTGCGGGGACTTTCGGATATTTGGCCCCAGAATATGCAGTGACAGGAAAAATCACCACGAAAGCAGATGTTTTTAGTTTCGGGGTTGTACTAATGGAGCTGTTGACTGGACTAATGGCACTTGATGAGGAAAGACCCGAGGAAAGCCAATACTTAGCAGCATGGTTCTGGTATATAAAATCAGATAAGAAGAAACTAATGGCTGCTATTGACCCAGTCCTTGATGTTAAGGAAGAAACATTTGAGAGCATCTCCATCATTGCTGAGTTAGCTGGGCACTGCACTGCCAGAGAACCAAGCCAACGGCCAGAGATGGGTCATGCCGTGAATGTGCTGGCACCGCTTGTTGAGCAATGGAAACCCTTTCATGATGACACTGAGGAGTATTCCGGGATCGATTATAGCCTTCCCCTTAACCAGATGGTGAAGGGATGGCAAGAGGCAGAAGGAAAGGACTTGAGTTATATGGACCTAGAAGACAGTAAGAGCAGTATCCCCGCGAGGCCTACTGGATTTGCAGATTCTTTTACTTCAGCCGATGGCCGGTGA 2832 0.4732 MLHSSLTLLFTLLFSLATADPNDVKILRQFRNGLDNPDLLPWPDSGDDPCGWKYIFCDSNNRVNQIQAKGLNLSGPLPRNLNQLTNLFNVGLQNNRLNGPLPSFSGLSNLKYLYLDNNNFDSIPSDFFDGLQSLEVLALDNNNLNASSGGWHLPQTLQGSTQLTNFSCMGCNLAGPLPEFLGTMNSLSFLKLSNNNLTGEVPLSLNGSASLQVLWLNNQQGERLTGRIDVVASMVSLTSLWLHGNLFTGTIPDNIGDLSSLRDLNLNVNNLVGLVPQGLGDLKLDKLDLNNNHFMGPIPNFKAAHVSYDYNDFCVNKSGVPCAFEVTALLEFLGGLNYPENLVDSWSGNDPCGGHWLGIKCNDDGKVNMINLPNLNVSGSLSPSVANLGSLVEIRLGGNDISGAVPGNWSSLTSLKLLDLSGNNISPPLPVFKTGLKPIVTGNPLFNGGAENPSSGSKNPSSGSGNVDPSSGQSNSSSSDSREPKKFKRKELVSIVAPIAGVAAAAFLLIPLYAYCFKRRKGGFQAPASLVIHPRDPSDSDSAVKIAVANNTYGSISTLTGSGSGSRNSSGIGESHVIEAGNLRISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVISSKALDEFQAEIAVLSKVRHRHLVSLLGFSIEGNERILVYEYMPQGALSKHLFHWKSLELEPLSWKRRLNIALDVARGMEYLHTLAHQSFIHRDLKPSNILLADDFRAKVSDFGLVKLAPEGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEERPEESQYLAAWFWYIKSDKKKLMAAIDPVLDVKEETFESISIIAELAGHCTAREPSQRPEMGHAVNVLAPLVEQWKPFHDDTEEYSGIDYSLPLNQMVKGWQEAEGKDLSYMDLEDSKSSIPARPTGFADSFTSADGR 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02667 943 FunFam Receptor-like kinase TMK4 21 319 - -
Spst1g02667 943 Gene3D Phosphorylase Kinase; domain 1 562 674 - -
Spst1g02667 943 ProSiteProfiles Leucine-rich repeat profile. 109 130 IPR001611 GO:0005515
Spst1g02667 943 FunFam receptor protein kinase TMK1 559 674 - -
Spst1g02667 943 Pfam Leucine rich repeat N-terminal domain 325 362 IPR013210 -
Spst1g02667 943 Pfam Leucine rich repeat N-terminal domain 21 58 IPR013210 -
Spst1g02667 943 Gene3D Ribonuclease Inhibitor 324 444 IPR032675 -
Spst1g02667 943 MobiDBLite consensus disorder prediction 447 480 - -
Spst1g02667 943 PANTHER OSJNBA0070M12.3 PROTEIN 6 943 - -
Spst1g02667 943 MobiDBLite consensus disorder prediction 921 943 - -
Spst1g02667 943 Pfam Protein kinase domain 600 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g02667 943 Gene3D Transferase(Phosphotransferase) domain 1 675 893 - -
Spst1g02667 943 FunFam Leucine-rich repeat receptor-like kinase 324 448 - -
Spst1g02667 943 FunFam receptor protein kinase TMK1 675 892 - -
Spst1g02667 943 ProSitePatterns Protein kinases ATP-binding region signature. 603 625 IPR017441 GO:0005524
Spst1g02667 943 ProSitePatterns Serine/Threonine protein kinases active-site signature. 722 734 IPR008271 GO:0004672|GO:0006468
Spst1g02667 943 MobiDBLite consensus disorder prediction 443 485 - -
Spst1g02667 943 SUPERFAMILY L domain-like 19 301 - -
Spst1g02667 943 SMART LRR_typ_2 131 159 IPR003591 -
Spst1g02667 943 SMART LRR_typ_2 258 281 IPR003591 -
Spst1g02667 943 SMART LRR_typ_2 412 434 IPR003591 -
Spst1g02667 943 SMART LRR_typ_2 107 130 IPR003591 -
Spst1g02667 943 SMART LRR_typ_2 234 257 IPR003591 -
Spst1g02667 943 CDD STKc_IRAK 603 876 - -
Spst1g02667 943 Pfam Leucine rich repeat 236 294 IPR001611 GO:0005515
Spst1g02667 943 Pfam Leucine rich repeat 108 151 IPR001611 GO:0005515
Spst1g02667 943 ProSiteProfiles Protein kinase domain profile. 597 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g02667 943 SUPERFAMILY L domain-like 324 436 - -
Spst1g02667 943 Gene3D Ribonuclease Inhibitor 20 320 IPR032675 -
Spst1g02667 943 SUPERFAMILY Protein kinase-like (PK-like) 573 873 IPR011009 -
Spst1g02667 943 SMART serkin_6 597 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02667 Spst-Chr1 35129017 35132078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02667 73 878 Receptor kinase-like Gene Family AT5G07280 33.142 7.97e-84 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Spst1g02667 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02667 K00924 - gmx:100305366 1565.82