Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02663 ATGGCGACATACTTTCATCATGGTAACTCCGAAATCCAATCAGGTGCCGCCGACGGACTCCAAACACTTGTCCTCATGAACCCCGGCTACATCCACTACCCTGACGCGCCGCCGCAGCCCTCGCCTTCACACGCTGCAGGAAATCTCGTGTTTCTCAACCCCGCCGCGGTTGCCGGCGCCAACAGCAACAACTCCTTCAACCCTCACGCGCCGCCCTCTCACACCCAACAATTCGTTGGAATTCCCCTCCCCGCTTCCCAGGACCTCAACCATCACTCCATGCACGCGCACCATGACGTCTCGGCCCTGCATGGCTTCCTCCCGCGCATGCAGTACAATCATTGGAACGCGCTCGACCCGGCCTCGGCGGCGCGTGATACTCCACGCGCGCAGCAGGGGCTGTCACTGGGGCTGGGGTCGTTCAGGGAAGGTCATGCGCCGGGCATGTCGGGCGACGACTTGCGCGTATCCGGCAGTTCGCCGTCGTCGGCTTCTGGGGTTACCAATAATGGAGCTTCGGGCATTCAGAGTTTGAGCTCAAAGTACTTGAAGGCAGCGCACGAACTTCTAGAAGAGGTTGTGAATGTTAACAATGGGATTGGCACTGAGTTGAGGAAAAAGAGTGGGGCACAGACCAAGGTGATTGGAGAATCATCAGCAGCAGGTAGTGGAGATGGTTCAGTTGGTGGGGAAGGGAACGGAAAACGCAGCTCTGAGCTATCAACGGCAGAAAGACAAGAAATTCAGATGAAGAAAGCCAAACTAATTGGCATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACCAGCAGATGGAGATTGTGGTGTCGTCGTTTGAGCAAGCTGCGGGGATTGGGTCTGCGAGGACATACACGGCTCTTGCATTGCAAACAATCTCCAAGCAGTTTCGGTGTTTGAAAGATGCGATTGCAGGGCAGGTTCGAGCTGCTAACAAGAGCTTAGGAGAAGAAGATTGCTTTGGAGGGAAAATAGAAGGTTCGAGGCTCAAATATGTGGACCATCATCTAAGGCAACAACGAGCTCTCCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGGGGATTGCCTGAAAGATCTGTTTCGGTTCTTCGTGCCTGGCTCTTCGAACACTTCCTCCACCCTTATCCCAAGGACTCGGACAAGCACATGTTGGCAAAACAAACAGGGCTAACTAGGAGCCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAAGAGATGAAGGATCATGAACAGAATGGGTCTGAGGATAAATCAAGCAAGAGCAATGAAGATTCTTCTACGAAAATGGCAGCCCCACCAGAGAAAGGTCCTTCCAATGAAACCGAGGCTAAAAGCTTCAATTCCAAACAAGAGGCTTCAAAGGGCCAGAACACTGCTATGGTTTCAGTTTCTAGACCATCAACATCACCACTTGGTGGGAATGTGAGAAACCAATCAGGATTCAGCTTCATGGGGTCATCAGAGCTAGAAGGGATCACACAAGGAAGTCCGAAGAAAGCAAGGAACCATGAGATGATGCATTCCCCAAATAGTGCCCCTTCAATGAGCATAGATGTGAAGCCCAATGAGGCAAACAATGAGCAGCTCCCAATGAAATTTGGGGATGAAAGGCAAGGCAGAAATGAATCCTCTTTCATGGGAAACCAAACAAACTTCGTTGGTGGTTTTGGACAGTACCCAATTGGGGATATTGGAAGGTTTGATGCAGAGCAGTTTGCACCAAGGTTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTGACTCATTACCAGGAACCCATCAAACATTTCTCCCAAACCAAAACATTCAACTTGGAAGAAGCTTGGACATTGGCGAACCAAATGAGTATGGCAGCATAAACACTTCCTCTCCTCGCTCTACAGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTAACCTGA 2034 0.5044 MATYFHHGNSEIQSGAADGLQTLVLMNPGYIHYPDAPPQPSPSHAAGNLVFLNPAAVAGANSNNSFNPHAPPSHTQQFVGIPLPASQDLNHHSMHAHHDVSALHGFLPRMQYNHWNALDPASAARDTPRAQQGLSLGLGSFREGHAPGMSGDDLRVSGSSPSSASGVTNNGASGIQSLSSKYLKAAHELLEEVVNVNNGIGTELRKKSGAQTKVIGESSAAGSGDGSVGGEGNGKRSSELSTAERQEIQMKKAKLIGMLDEVEQRYRQYHQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQVRAANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKDHEQNGSEDKSSKSNEDSSTKMAAPPEKGPSNETEAKSFNSKQEASKGQNTAMVSVSRPSTSPLGGNVRNQSGFSFMGSSELEGITQGSPKKARNHEMMHSPNSAPSMSIDVKPNEANNEQLPMKFGDERQGRNESSFMGNQTNFVGGFGQYPIGDIGRFDAEQFAPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIGEPNEYGSINTSSPRSTAAYESISMQNPKRFAAQLLPDFVT 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02663 677 Coils Coil 245 272 - -
Spst1g02663 677 ProSiteProfiles 'Homeobox' domain profile. 358 421 IPR001356 GO:0003677
Spst1g02663 677 MobiDBLite consensus disorder prediction 432 448 - -
Spst1g02663 677 FunFam BEL1-like homeodomain protein 9 364 426 - -
Spst1g02663 677 Pfam Homeobox KN domain 378 417 IPR008422 GO:0003677|GO:0006355
Spst1g02663 677 SMART prehox3 169 313 IPR006563 -
Spst1g02663 677 MobiDBLite consensus disorder prediction 465 518 - -
Spst1g02663 677 MobiDBLite consensus disorder prediction 432 541 - -
Spst1g02663 677 SUPERFAMILY Homeodomain-like 362 428 IPR009057 -
Spst1g02663 677 SMART HOX_1 361 425 IPR001356 GO:0003677
Spst1g02663 677 CDD homeodomain 361 422 IPR001356 GO:0003677
Spst1g02663 677 Pfam Associated with HOX 179 312 IPR006563 -
Spst1g02663 677 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 448 - -
Spst1g02663 677 MobiDBLite consensus disorder prediction 138 171 - -
Spst1g02663 677 MobiDBLite consensus disorder prediction 206 244 - -
Spst1g02663 677 Gene3D - 364 443 - -
Spst1g02663 677 MobiDBLite consensus disorder prediction 155 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02663 Spst-Chr1 35017395 35020293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02663 1 676 Homeobox Transcription Factor Family AT2G35940 50.270 1.81e-178 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Spst1g02663 POX 2e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02663 - - gmx:100810901 1216.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02663 1 35017395 35020293 Spst1g02663 1 35017395 35020293 ECH