Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02661 ATGGCTGAAATTGAAGTTCCTCAGTATTTCATCTGCCCTATATCTCTTCAAATCATGAAAGACCCGGTAACCACTATGACTGGCATCACATATGACCGAGAAAGCATTGAGCAATGGTTATTCATCAACGAAAACACCACATGCCCAATCACAAGACAGCATCTCCCTAAAGACTCTGACTTAACCCCAAATCACACCCTTCTCCGTCTAATCCAAGCTTGGTGCACTCAAAATGGTGTTCATAGGTTTCCCACCCCCAAGTCATCACTTAACAAGTTTCAAGTCCTCAAGATTCTCAAAGACCTCAAGGACCCCAACTTGCAACTTATGAAGATCATGGAGTTGAAGTTCCTAGCATCTCAGAATGAGAGAAATAAAAAGTGTTTACTTCAAGCTGGTGTATCAAATGCCATGATCCTATTCTTGTTGACTTGTTTCAGAAAAGGGCAATTTGATAAGGGTGTAGAAGAAGCCCTTAGTTTATTGGAGCTTTTTGATGTGCCAGAAGAGAAAATAAAGGTTCTTCTAGAGGAAAACGATCAGATATTGGATAACCTAACGTGGGTTTTGGGCTGTGAGGTGGAAAAATATTCAGTTGCTGTGAAGTCCCATGCAGTGATGTTACTCAACACAATCGTGCAAAAAGCTAGCTCGAAAGTAATGGAGAGACTGAAACCTCAAATGTTTGAAACAATTGTGAAGATTTTAAGATGTGGAACAACCCAACAAGGAATGAAAACTGCTCTTCATGTCATGGTAAAGGCGTGCCACTGGGGGAGAAATAGGGTCTTGATGGTTGAAAGTGGTGCGGTTTTTGAGCTGATAGAGATTGAGTTGTTGGGGACACGTGAAAAGAGCACCACGGAACTGACCATGGAGATACTGTTTCATCTGTGTTCTTGTGCTGACGGAAGAGCTCAGTTTGTGAATCACAAAGGTGCCATTGCTTTGTTGACGGAGCGAATCTTCACGGTTTCGAAAGCGGTGGATGGCAGAATCGTGCTTATTCTTTCATTGGTGTTGTCTACGTTCTCTGCCACACGTGCGGTAGTTGAGGAAATGGCGGAGCTTGGAACTGTGTCGAAGCTTTGTAGGTTGGTTCATCATAGTGATGATCATGGCACGTATCTGAAAGACAAAGCAAGGGAAATTCTCGGGTCTCATGCTAACGTTTGGAAATATTCTCCTTGCATTTCTGATCATGTGATTAGAACTTTTACAAGAAGTTAA 1230 0.4236 MAEIEVPQYFICPISLQIMKDPVTTMTGITYDRESIEQWLFINENTTCPITRQHLPKDSDLTPNHTLLRLIQAWCTQNGVHRFPTPKSSLNKFQVLKILKDLKDPNLQLMKIMELKFLASQNERNKKCLLQAGVSNAMILFLLTCFRKGQFDKGVEEALSLLELFDVPEEKIKVLLEENDQILDNLTWVLGCEVEKYSVAVKSHAVMLLNTIVQKASSKVMERLKPQMFETIVKILRCGTTQQGMKTALHVMVKACHWGRNRVLMVESGAVFELIEIELLGTREKSTTELTMEILFHLCSCADGRAQFVNHKGAIALLTERIFTVSKAVDGRIVLILSLVLSTFSATRAVVEEMAELGTVSKLCRLVHHSDDHGTYLKDKAREILGSHANVWKYSPCISDHVIRTFTRS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02661 409 Gene3D - 93 390 IPR011989 -
Spst1g02661 409 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Spst1g02661 409 SUPERFAMILY RING/U-box 4 84 - -
Spst1g02661 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Spst1g02661 409 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Spst1g02661 409 SUPERFAMILY ARM repeat 96 374 IPR016024 -
Spst1g02661 409 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Spst1g02661 409 PANTHER WDSAM1 PROTEIN 3 399 IPR045185 GO:0061630
Spst1g02661 409 CDD RING-Ubox_WDSUB1-like 7 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02661 Spst-Chr1 35007189 35008418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02661 3 398 U-box Gene Family AT3G11840 40.271 5.87e-102 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02661 - - cill:122277374 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02661 1 35007189 35008418 Spst1g02661 1 35007189 35008418 ECH
Spst1g02661 1 35007189 35008418 Spst7g00160 7 1219411 1220879 PCT
Spst7g00162 7 1236526 1237767 Spst1g02661 1 35007189 35008418 PCT